Gene Shewana3_2681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2681 
Symbol 
ID4478448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3204926 
End bp3206428 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content50% 
IMG OID639727287 
Productvibriolysin 
Protein accessionYP_870314 
Protein GI117921122 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3227] Zinc metalloprotease (elastase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.161889 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTT ATCTCTTACC TTCAGCAGTG GCGGTCTGTA TTGCGGCGAG TCTTCAGGCG 
CAAGCAGTCG AAATCAAAGT GAATCACGGG CAATCCCTCT CGGCAGCGGC TGGGTTAAGC
CAACAACACA GCTTTAAAGC GATCAAAACG GTCACGTTTA ATAAAGGTCA AACCAAAACA
AAAGCGTTGC AATATTTTAA TGGCGTACTC GTATATGGGC ATCATCTGGT GGTGAGTAAC
GATGATAGCG AGCAGAGTGC GATTGGGGAT GTGGCACAAA TTGCGGATGA TTTTTCGGTA
GAGGCAGGGA TTTCTCAAGG GCAGGCGATT GCGGCTTTGA ATCGGTTATA TCCAGGTTCG
GCGGCAACGG GAAAAAAGGA TGTTGAGCTA GTGATCCTGA TGCAGGACGA TACCCCGAGG
TTAGTGTATC GGGTGTCCTA TTTAAGCGAC CAAACGGATG CACTGTCTCG GCCAACGGGC
TTTGTCGATG CGCAAACTGG CGAGGTGCTT GAGCATTGGA ATGAAATCAT GACCGCCAAA
AATAACGTCG GTAAACCCGG TAGTGGTGGA GGTGGTTCAG GTGGCAGTAG CAATCCCTTT
GATGCAACTG GCCCTGGCGG CAATGCCAAA ATCGGGGATT ACTATTACGG CAGTGATTAC
GGTTTTCTTA AGGTGAGTGA GTCTAATGGT ACATGCACTA TGACCAACGC CAACGTGAAA
ACCGTGAACA TGGCGAACTC GACCCGCCGT GGCTCGGTGT TCACCTTTAC TTGCCCAGAG
AACACTTATC AGACGGTCAA TGGCGCTTAT TCGCCTTTAA ATGATGCCCA CTATTTCGGT
GGCGTTATTT TTAATATGTA TAAGGATTGG TATAACACAG CGCCGTTAAC CTTTCAGTTA
GAGATGCGGG TGCATTATGG CCGTAACTAT GAAAATGCCT TCTGGGATGG CTCTGCCATG
TCCTTCGGTG ACGGTGCCAG TTACTTCTAT CCCCTCGTGA GTTTGGATGT TTCCGCCCAT
GAAGTGAGCC ACGGTTTTAC CGAGCAAAAC TCAGGCTTAA ATTACAGTGG CCAGTCCGGC
GGTATCAATG AGGCGTTTTC GGATATTGCC GGTGAAGCGG CCGAGTTCTA CATGCGTGGC
AGTAACGACT GGAAAGTGGG TTACGACATA GTTAAAGGTA ATGGCGCACT GCGTTATATG
GATAATCCGA CTAAGGATGG CCGCTCAATC GACAATGCCG CCAACTACAC TAGTTCCATG
GATGTGCATT ACTCCTCAGG GGTGTTTAAC AAAGCCTTTT ATACGCTGGC GACTAAGAAT
GGTTGGGATA CCCGCAAGGC GTTCGATGTG TTTGTGTTAG CGAACCAGCT TTATTGGACA
CCGACCTCGA CCTTTAACAA AGCGGCCTGC GGGGTTCAGC AGGCGGCGAG TGCCAAAGGT
TCTGGTTATC CAGTGGCGGA TGTGGCTGCG GCATTTTTAG CGGTAGGGGT TATCTGCCAG
TAA
 
Protein sequence
MKVYLLPSAV AVCIAASLQA QAVEIKVNHG QSLSAAAGLS QQHSFKAIKT VTFNKGQTKT 
KALQYFNGVL VYGHHLVVSN DDSEQSAIGD VAQIADDFSV EAGISQGQAI AALNRLYPGS
AATGKKDVEL VILMQDDTPR LVYRVSYLSD QTDALSRPTG FVDAQTGEVL EHWNEIMTAK
NNVGKPGSGG GGSGGSSNPF DATGPGGNAK IGDYYYGSDY GFLKVSESNG TCTMTNANVK
TVNMANSTRR GSVFTFTCPE NTYQTVNGAY SPLNDAHYFG GVIFNMYKDW YNTAPLTFQL
EMRVHYGRNY ENAFWDGSAM SFGDGASYFY PLVSLDVSAH EVSHGFTEQN SGLNYSGQSG
GINEAFSDIA GEAAEFYMRG SNDWKVGYDI VKGNGALRYM DNPTKDGRSI DNAANYTSSM
DVHYSSGVFN KAFYTLATKN GWDTRKAFDV FVLANQLYWT PTSTFNKAAC GVQQAASAKG
SGYPVADVAA AFLAVGVICQ