| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2644 |
|---|
| Symbol | |
|---|
| ID | 4478408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3157848 |
|---|
| End bp | 3159050 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727247 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_870277 |
|---|
| Protein GI | 117921085 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3768] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR01620] conserved hypothetical protein, TIGR01620 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.582755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAG ATTCGTTATC AGCTTCAAGT GAGTCAGAGA CAAACGGGCT CGATAAGTCA
GTGTCTGAAA ATACACTTGA AAGCCAACCG CTCAAAAAAC AACAAGTATT TGATTCTGAC
AAGGTCAAAC TTCAGTCTGC TTCCGATGAG CTTAAGAGTG CCCAAGCCTT TGCACCACAG
ACACCCTTAA AAGCGGTGGA TGAGGTTGTC GATGATGCCT TAGCGGCCCA TCCGCAAGCA
TTGGATGTGT CGTCCATTCG GCCAACACTG CATCAATCTC GCCGTTGGTC TTGGTTGGCG
CGCTTTTCCG TTTTTGGGTT ATTGCTACTG GTTTTAGTGC AAACGGGATT AGGATTGCGG
GACGCTTGGT TAGCAAGCCC TTGGTTATTT AGCTTTTATG GCGCAGTACT CGGTTTAGTC
GGCAGCTGGG CTATGGTCGG AGCCTTGGGC GAATACCGTA AATTAAAACG CCTCAAGCAG
GTTGCCGATA CGCAAGAGTC CGGCGCAAGA CTTGCTCTCA GTATGCAAAT GGGGGAGGCC
GATGGTTTTA TCAATAACAT AGTGCGCCAT TATCCCGATA GTCAGGGGCT ACAGCGGCTG
CGTCAGTCGC TCAAAGATGA ACACAATGAC GCCGAAAAAG TGCTGCTATT TGAGGACTTA
GTGCTGACTG AGCGGGATGA ACTCGCGAAA AAAATCGTCC GTCGATACGC GGCCGAGTCT
GCAGTGTTGC TTGCCGCGAG TCCACTTGCT GCATTGGATA TGGCCATTAT TCTTTGGCGC
AATCAACGCA TGCTGCGGGA TGTCGCCGCC TGTTACGGGA TAGAGTTAGG CTATTGGAGC
CGGATTAAAC TCATTCGCAG CATCATCATG AACATCATCT ATGCCGGTAC CAGCGAGTTA
GTGACCGATT TGGGTACCCA ATTGCTGTCG GTCGAGATGA CGGGGAAATT ATCCGCACGG
CTTGCCCAGG GCTTAGGCGG CGGACTGCTC ACGGCACGTT TAGGTTATCA AGCCATGGCG
CTGTGTCGAC CTATTCAGTT TAGGGAGGAG CAGCGCCCCA AATTGTCCAA AGTTCATCAA
GAGTTGTTGA TTGAGCTTAA ACAGTTTGCC GGTAAGTTAT TGACTAAAGA CGGACGGGAT
GCGCTTAAGA GTCAATTAGA GGCAGCGGAG CTTAAAACTG GCTCAACACC CAAAGAGAAA
TAA
|
|---|
| Protein sequence | MSLDSLSASS ESETNGLDKS VSENTLESQP LKKQQVFDSD KVKLQSASDE LKSAQAFAPQ
TPLKAVDEVV DDALAAHPQA LDVSSIRPTL HQSRRWSWLA RFSVFGLLLL VLVQTGLGLR
DAWLASPWLF SFYGAVLGLV GSWAMVGALG EYRKLKRLKQ VADTQESGAR LALSMQMGEA
DGFINNIVRH YPDSQGLQRL RQSLKDEHND AEKVLLFEDL VLTERDELAK KIVRRYAAES
AVLLAASPLA ALDMAIILWR NQRMLRDVAA CYGIELGYWS RIKLIRSIIM NIIYAGTSEL
VTDLGTQLLS VEMTGKLSAR LAQGLGGGLL TARLGYQAMA LCRPIQFREE QRPKLSKVHQ
ELLIELKQFA GKLLTKDGRD ALKSQLEAAE LKTGSTPKEK
|
|---|
| |