| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2593 |
|---|
| Symbol | |
|---|
| ID | 4479471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3096472 |
|---|
| End bp | 3098154 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639727196 |
|---|
| Product | signal transduction histidine kinase, LytS |
|---|
| Protein accession | YP_870226 |
|---|
| Protein GI | 117921034 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3275] Putative regulator of cell autolysis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0091271 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0052142 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGA TCTTGCTCCT GACTCAACAG ATGTCACTCT ACTTAGTGAT AGTGTATTTG
GTCAGTAAAA CGCCACTCTT TAAACTGTTC GCCGAAACCG CGCCACGCCT ACCGCACAAG
GTATTTATTT ATCTTATCTT TTCAAGCTTT TGTATCATGG CGACTTATTT TGGCGAGCAA
ACCTCGGGCG CCATTGCCAA TACTCGCGCG ATGGGCGCCG TATTAGGTGG CTTACTCGGC
GGTCCTGTCA CGGGATTTTT AGTCGGTATC ACGGGAGGTT TGCACCGCTA CAGTATGGGT
GGTTTTACCG ATTTAGCCTG CGCCATTTCC ACTACCCTCG AAGGCCTGTC AGCGGGCATG
ATCAGTTTTT ACCTGCGCCG CGCGGGCAAG AGCGAGCTTA TCTACAATCC ACTGTTAGTT
TGCCTAGTGA CCTTTTACGC CGAAATGATG CAGATGAGCA TTATTCTACT GATCGCCCGC
CCATTTGATG ATGCCTGGGA ATTAGTTCGA CAGATTGCAC CGCCGATGCT CTTAGTTAAT
TCCATCGGTG CGGCGCTGTT TATGAGCATG ATCCGTGACC AAAAAACCAT GTTCGATAAG
CTATCCTCCA GCTTCTCGAC CAAGGCGCTC AAGATTGCCG AGCGCAGCGT GGGCTTACTC
TCCAAGGGCT TTAATGAAGA GAGTAGCGGT AAGGTTGCGC AAATTGTGAT CCAAGAAACC
AATGTCGGCG CAGTGGCCAT TACCGACCGC GAAAAACTCT TGGCTTTTAT TGGCATAGGC
GCTGACCATC ATATTCCCGG CACACCGATT TCCTCAAAAA TAACCCTTGA GGCCATTAAC
CAGAACAAAG TGATGTTCGC CGATGGGGTA GAAATGCCCT ATTCCTGCTC GATTTCGAGC
CAGTGTAAAC TCGGTTCGAG CCTAGTGATC CCACTTCGCA GCGACACTGA AGTCATTGGC
ACCATCAAGT TATACGAGCC TAAAAATAAA CTGTTCCTGA ACATTAACCG CACCTTAGGG
GAAGGGATCG CGCGGCTATT GTCGAACCAG ATCCTCTATG GCCGCTTTGA ACAGCAGCAA
AATCTGCTGA CCCAAGCCGA GCTCAAATTA CTGCAAGCTC AAGTTAATCC GCATTTTTTA
TTCAACGCAC TCAATACCAT CAGTGCGATT ATTAAGCGCG ATCCCGATAT GTCGAAGCAA
CTGCTACAGC AGTTATCTCA GTTTTTGCGG ATCAATTTAA AGCGTACCAC GGGTTTAGTG
ACACTCGGGG ATGAGCTCGA TCACATCGCC TCCTATCTCA CCATTGAGAA AGCCAGATTT
ATTGATAAAT TACAGGTCAA TATCGCTATT CCTGAGTCAC TCTATCACTG CAAAGTGCCT
GCATTTACCC TGCAACCGAT CATTGAAAAT GCCGTCAAAC ACGGCACCTC CCATATGATT
GAGCAAGGGC AAATCAAGGT GACAGGCCGA ATGGATGAAC AGATATTGGT CTTAGAAGTC
ACTGATAATG CTGGGCTTTA CCAGCCGATT ATTGGTTCTG AAGGGCTAGG CATGAACTTA
GTCCATAAAC GGATCCAAAA CCTGTTTGGT GAGCAGTACG GCATTCAGGT GGAATGCGAG
CCGGATGAGT ACACCAAAGT CACTATCCGC TTACCCATAG AACAGACGGA AACCAGCACG
TGA
|
|---|
| Protein sequence | MSLILLLTQQ MSLYLVIVYL VSKTPLFKLF AETAPRLPHK VFIYLIFSSF CIMATYFGEQ
TSGAIANTRA MGAVLGGLLG GPVTGFLVGI TGGLHRYSMG GFTDLACAIS TTLEGLSAGM
ISFYLRRAGK SELIYNPLLV CLVTFYAEMM QMSIILLIAR PFDDAWELVR QIAPPMLLVN
SIGAALFMSM IRDQKTMFDK LSSSFSTKAL KIAERSVGLL SKGFNEESSG KVAQIVIQET
NVGAVAITDR EKLLAFIGIG ADHHIPGTPI SSKITLEAIN QNKVMFADGV EMPYSCSISS
QCKLGSSLVI PLRSDTEVIG TIKLYEPKNK LFLNINRTLG EGIARLLSNQ ILYGRFEQQQ
NLLTQAELKL LQAQVNPHFL FNALNTISAI IKRDPDMSKQ LLQQLSQFLR INLKRTTGLV
TLGDELDHIA SYLTIEKARF IDKLQVNIAI PESLYHCKVP AFTLQPIIEN AVKHGTSHMI
EQGQIKVTGR MDEQILVLEV TDNAGLYQPI IGSEGLGMNL VHKRIQNLFG EQYGIQVECE
PDEYTKVTIR LPIEQTETST
|
|---|
| |