| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2584 |
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| Symbol | |
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| ID | 4479246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 3087442 |
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| End bp | 3089244 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639727187 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_870217 |
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| Protein GI | 117921025 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.544743 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.120897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAT CTCCTAAAGA CGAAATGTGG AAAGTTTTCA AACGATTACT GGGCTACCTC
AAACCGATGA AGGGCATGTT TTTGCTTTCA GTTGTCGGCC TGATTGTATA TGGGCTTGTC
GACGCGGCCT TTATTTCTTT TATCGGTCCT TTTATCGATA AAGGCTTTTC CAGTGCTCCT
GCGATCAGTA ACGGTATCGC ACTCCCCACT AGCCAAGGCT TCCATGCCGA TAACCAAGTG
TTATTAATGG CACCGATAGT GGTTATTTTA ATGTTTTCCC TGCGCGGTTT TGCGAACTTT
GTCTCCACCT ACGGCATTTC TTACATGAGT GCGCGTTTGA TCATGGATAT GCGTCAGCAG
GTGTTTGAGC ATTATCTAAG CTTGCCCGTG AGCTACATGG ACAAAGAAAA CACCGGGAAC
TTGATTTCAA AAGTCACCTT CGATACCGAA CAAATTGCCC GCGCATCGGG TAGTGCCTTG
ATCTCCATCG TACGTGATGG GGTGACGGTT ATCGGTATGC TTGCGCTGAT GTTTTATAAC
TCTTGGAAGC TTTCCCTCTG TATTTTAGTG ATTGGCCCAA TTATGGGGTT GGTGATCACT
ATTGTCAGTC GCCGCTTCCG TAAGGTATCG AAACAAATCC AAACGGCGAT GGGCGATGTC
AGTGCCGCCA CCGAGCAGAT GATCAAAGGC CATAAAAACG TCTTGGCCTT CGGCGGGCAA
GAAACCGAAA CGGCGCGTTT TGCCAAAGTG AATGACAGAA ACCGTCATCA AAACATGAAA
CTCGCCGTGG CGCAGGCCAT TAGCCAGCCG CTGATCATGG TGATTGGCTC CTTTGCCTTG
GCCTTTGTGC TGTATGCGGC GAGCCTCGAT AGCATGAAAG CCGATTTGAC CGCAGGTACC
TTCGCGACCA TCCTTGGCGC TATGATGGCC ATGCTGCAAC CTATCAAAAA CCTCACGCGT
GTGAATGCCG AATTTCAGCG CGGTATCGCG GCCTGTACCA CGGTCTTTGA ATTGTTAGAC
ACTTTGCCTG AATCCGATAC GGGGACTTAT ACCGTCAAGC GTGCTAAGGG CAACTTACGT
TTTGATAATG TGTCCTTCAG CTACGACGGG CAGGAGCGCC GCGCCTTAGA TAATATCGAT
TTCGAGGTCA CCCAAGGGCA AACCTTGGCC TTGGTCGGAC GTTCTGGCTC GGGTAAATCC
ACTATCGCCA GTCTGGTGAC ACGTTTCTAC ACTGGCTTGG AATCTGGCGA CATTCTGCTC
GATGATGTCA GCATCTATGA TTACTCATTG AAATCATTGC GTAATCAAGT AGCACTTGTG
TCGCAGCAAG TGACGTTGTT TAACGATACC ATTGCTAATA ACATCGCCTA TGCCTATCCC
GGCGAAGCGA CCCGCGAGCA GATTATTCAA GCGGCGACCT TGGCCCATGC GATGGAGTTT
ATCGAGCAAC TGCCCGAAGG TTTAGATACC CAAGTGGGTG AAAACGGCGT GTTATTATCG
GGCGGTCAGA GACAACGTAT CGCGATTGCC CGCGCTATGC TGCGCGATGC GCCTGTGCTG
ATCCTCGATG AAGCCACCTC AGCACTCGAT ACCGAATCTG AGAAGGCGAT TCAGCAAGGG
CTGGATAATC TTCGTCAAAA CCGCACCTCG GTCGTGATTG CCCACCGTTT GTCGACCATT
GAAAGTGCCG ATCAAATTTT AGTGGTCGAT CAAGGTCGTA TCGTTGAGCG CGGTACCCAT
AAATCCCTGC TGGAACTTGG CGGCATGTAT GCCAAGTTAT ACCAAATGCA GTTTGGTAGC
TAA
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| Protein sequence | MTASPKDEMW KVFKRLLGYL KPMKGMFLLS VVGLIVYGLV DAAFISFIGP FIDKGFSSAP
AISNGIALPT SQGFHADNQV LLMAPIVVIL MFSLRGFANF VSTYGISYMS ARLIMDMRQQ
VFEHYLSLPV SYMDKENTGN LISKVTFDTE QIARASGSAL ISIVRDGVTV IGMLALMFYN
SWKLSLCILV IGPIMGLVIT IVSRRFRKVS KQIQTAMGDV SAATEQMIKG HKNVLAFGGQ
ETETARFAKV NDRNRHQNMK LAVAQAISQP LIMVIGSFAL AFVLYAASLD SMKADLTAGT
FATILGAMMA MLQPIKNLTR VNAEFQRGIA ACTTVFELLD TLPESDTGTY TVKRAKGNLR
FDNVSFSYDG QERRALDNID FEVTQGQTLA LVGRSGSGKS TIASLVTRFY TGLESGDILL
DDVSIYDYSL KSLRNQVALV SQQVTLFNDT IANNIAYAYP GEATREQIIQ AATLAHAMEF
IEQLPEGLDT QVGENGVLLS GGQRQRIAIA RAMLRDAPVL ILDEATSALD TESEKAIQQG
LDNLRQNRTS VVIAHRLSTI ESADQILVVD QGRIVERGTH KSLLELGGMY AKLYQMQFGS
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