Gene Shewana3_2566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2566 
Symbol 
ID4479228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3066717 
End bp3067706 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content47% 
IMG OID639727169 
Productribosomal large subunit pseudouridine synthase C 
Protein accessionYP_870199 
Protein GI117921007 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00643292 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCCG TTTTAAGCAG ATGGCACATC ATGAATACAG AATCTCCACA GCTACAGGTG 
CAGTTGATCA CGATTGACGA AGACCACCTC GACCAACGAA TCGACAATTT TTTAATCACA
GTGCTCAAGG GCGTCCCTAA GAGCATGATT TACCGTATCG TCCGTAAGGG CGAGGTACGG
GTGAATAAAA AACGCATTAA GCCCGAGTAC AAATTGCAAA TCGGTGATGT GGTTCGCGTG
CCGCCGGTCA GAATGGCTGA GCAGGACAAT CGCACCGCGC CTTCAGCAAA CTTGAGTAGA
GTGTCACAGC TTGAAGACCG TATTTTACAT GAAGACAATC ATCTGATTGT ATTAAATAAA
CCTGCGGGGA TTGCGGTGCA TGGTGGCAGT GGCGTCGATT ATGGTGTGAT TGAAGCATTG
CGTTCCTTAC GTCCACAACA AAAGTTTTTA GAACTGGTTC ACCGTCTCGA TAAAGACACC
TCGGGCGTGT TACTTGTGGC GAAAAAACGT AGTGCGCTTA AGCATATGCA TGACCAACTG
CGTTATAAAA AGATGCAGAA GGATTACTTG GCCTTAGTTA AAGGCGAGTG GTCGGCGCAG
GATAAAGTGG TTAAACAACC ACTGTTAAAG CTGACACTTA AGTCGGGCGA GCGTATCGTT
CGAGTCAATG CCGAAGGTAA ACCTTCTGAA ACGCGTTTTA AAATTGTACA GCGTTATCAA
GGTTGTACGC TTGTGCAAGC GAGTCCTGTG ACAGGACGTA CCCACCAAAT TCGGGTGCAT
TGCCAATATA TGGGACATCC TATCGCCTGT GATGAAAAAT ACAGCGAGCA GGCGTTCGAT
GACAGTATGC GCGCACTGGG TCTGACTCGA CTGTTTTTAC ATGCGGCAGA GTTAATGTTT
ATTCATCCTG AAAACGATGA GGTGATGCGA GTCTCAGCGC CGCTTGATGA TAATTTGCAG
CAACTGCTAA GCAAGTTAAA GCGCGCTTAG
 
Protein sequence
MAAVLSRWHI MNTESPQLQV QLITIDEDHL DQRIDNFLIT VLKGVPKSMI YRIVRKGEVR 
VNKKRIKPEY KLQIGDVVRV PPVRMAEQDN RTAPSANLSR VSQLEDRILH EDNHLIVLNK
PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHMHDQL
RYKKMQKDYL ALVKGEWSAQ DKVVKQPLLK LTLKSGERIV RVNAEGKPSE TRFKIVQRYQ
GCTLVQASPV TGRTHQIRVH CQYMGHPIAC DEKYSEQAFD DSMRALGLTR LFLHAAELMF
IHPENDEVMR VSAPLDDNLQ QLLSKLKRA