Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2566 |
Symbol | |
ID | 4479228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3066717 |
End bp | 3067706 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639727169 |
Product | ribosomal large subunit pseudouridine synthase C |
Protein accession | YP_870199 |
Protein GI | 117921007 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00643292 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCCG TTTTAAGCAG ATGGCACATC ATGAATACAG AATCTCCACA GCTACAGGTG CAGTTGATCA CGATTGACGA AGACCACCTC GACCAACGAA TCGACAATTT TTTAATCACA GTGCTCAAGG GCGTCCCTAA GAGCATGATT TACCGTATCG TCCGTAAGGG CGAGGTACGG GTGAATAAAA AACGCATTAA GCCCGAGTAC AAATTGCAAA TCGGTGATGT GGTTCGCGTG CCGCCGGTCA GAATGGCTGA GCAGGACAAT CGCACCGCGC CTTCAGCAAA CTTGAGTAGA GTGTCACAGC TTGAAGACCG TATTTTACAT GAAGACAATC ATCTGATTGT ATTAAATAAA CCTGCGGGGA TTGCGGTGCA TGGTGGCAGT GGCGTCGATT ATGGTGTGAT TGAAGCATTG CGTTCCTTAC GTCCACAACA AAAGTTTTTA GAACTGGTTC ACCGTCTCGA TAAAGACACC TCGGGCGTGT TACTTGTGGC GAAAAAACGT AGTGCGCTTA AGCATATGCA TGACCAACTG CGTTATAAAA AGATGCAGAA GGATTACTTG GCCTTAGTTA AAGGCGAGTG GTCGGCGCAG GATAAAGTGG TTAAACAACC ACTGTTAAAG CTGACACTTA AGTCGGGCGA GCGTATCGTT CGAGTCAATG CCGAAGGTAA ACCTTCTGAA ACGCGTTTTA AAATTGTACA GCGTTATCAA GGTTGTACGC TTGTGCAAGC GAGTCCTGTG ACAGGACGTA CCCACCAAAT TCGGGTGCAT TGCCAATATA TGGGACATCC TATCGCCTGT GATGAAAAAT ACAGCGAGCA GGCGTTCGAT GACAGTATGC GCGCACTGGG TCTGACTCGA CTGTTTTTAC ATGCGGCAGA GTTAATGTTT ATTCATCCTG AAAACGATGA GGTGATGCGA GTCTCAGCGC CGCTTGATGA TAATTTGCAG CAACTGCTAA GCAAGTTAAA GCGCGCTTAG
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Protein sequence | MAAVLSRWHI MNTESPQLQV QLITIDEDHL DQRIDNFLIT VLKGVPKSMI YRIVRKGEVR VNKKRIKPEY KLQIGDVVRV PPVRMAEQDN RTAPSANLSR VSQLEDRILH EDNHLIVLNK PAGIAVHGGS GVDYGVIEAL RSLRPQQKFL ELVHRLDKDT SGVLLVAKKR SALKHMHDQL RYKKMQKDYL ALVKGEWSAQ DKVVKQPLLK LTLKSGERIV RVNAEGKPSE TRFKIVQRYQ GCTLVQASPV TGRTHQIRVH CQYMGHPIAC DEKYSEQAFD DSMRALGLTR LFLHAAELMF IHPENDEVMR VSAPLDDNLQ QLLSKLKRA
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