| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2565 |
|---|
| Symbol | |
|---|
| ID | 4479227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3065931 |
|---|
| End bp | 3066665 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639727168 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_870198 |
|---|
| Protein GI | 117921006 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000244874 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCATT CAACCCAACG AAAATATGAT TTAGTGATTT TTGATTGGGA TGGCACGTTA
ATGGATTCCA TCGGCAAGAT TATTGTTTGC ATTGAGAATA TGGCAAGGGT GCTGGCGTTA
CCCGTGCCTT CAGAAGTGGA TATTCGCAAT GTGATTGGCT TGTCGATGAC GCAGGCGTTA
CAGGTATTAT TTCCCGTCGG TTTGACTTCA GGGCAGTCGT GTATCGGATG TGCAAGCAGT
GCAACACAAG AAAATGCTGC TCAAGCGCTT GTAGGCACCG ATGATTGCTA TATGAAGATG
CGCGCCGAGT TCAAGACGCA GTATTTGCAC CTTGATACCA CGCCAACGCC GATTTTTAAC
CAAGCCCCCC AATTACTCGA ATCATTATCA ACGGCTGGGT ATCAACTTGC TGTCGCGACG
GGTAAGGCGA GAGCAGGCTT AGTGCGCGTG TGGGAGCAAT CTGGCTTAGG TCACTACTTT
ATCGCTTCTC GCTGCGCCGA TGAGGCGCAG AGTAAACCTC ATCCTGAAAT GATCTTAAGT
TTGCTGCAGG AGTTAGGCGT TCAGCCTGAA CGAGCCTTGA TGGTCGGAGA CTCTTTGTTG
GATTTGACCA TGGCGGCGAA TGCGGGGATT GATGCTGTGG GCGTAACTTA CGGCGCACAT
AATGAAGCAA TGCTCCAGCA AGCCAATCCC ATCGGCATAA TTGATTCCCC TGAAAAACTC
TTGCTGCATT TATAG
|
|---|
| Protein sequence | MSHSTQRKYD LVIFDWDGTL MDSIGKIIVC IENMARVLAL PVPSEVDIRN VIGLSMTQAL
QVLFPVGLTS GQSCIGCASS ATQENAAQAL VGTDDCYMKM RAEFKTQYLH LDTTPTPIFN
QAPQLLESLS TAGYQLAVAT GKARAGLVRV WEQSGLGHYF IASRCADEAQ SKPHPEMILS
LLQELGVQPE RALMVGDSLL DLTMAANAGI DAVGVTYGAH NEAMLQQANP IGIIDSPEKL
LLHL
|
|---|
| |