| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2551 |
|---|
| Symbol | |
|---|
| ID | 4479213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3050707 |
|---|
| End bp | 3052923 |
|---|
| Gene Length | 2217 bp |
|---|
| Protein Length | 738 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639727154 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_870184 |
|---|
| Protein GI | 117920992 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000835907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAATCAC GTTTTGCCTA TTCAATACTA ACGCTTGCCC TGATGCCGCA TTTGGTCTTT
GCGGCTGCGC CTAACGCTCA AGAGCGTCAA CCCGAACAAG AAAGTGTTTC AACGGCACAA
GCCGCTATAC AAACCAACAC ACAGGCCGAA GCACAAGCTG AGACTAAGGC GCCAGAGCGC
ATTGTTGTGC GCGGTCGCGC CATGCAAATG TATGTCGATA AAGAGACGGA AATCGGCACT
AAAACGGCCA TCAATGTGAT GGAGCTGCCG CAGTCAGTAC AAGTGCTGAC CGAGCAACTG
ATTGACGATC AAGCCGCCCG CAATATTACT GACTTATACC GCTCCATTGC CGGTGTCAGT
GAATTTAGCT ATTCCGGCGT GACCTTTCGT GGCTTTCGCG ACGATGCCAA CGTGTTTTAC
GATGGCGTGC GTGGCGACCC GTATTCGGGA TTTTCGGTGC CACAACTGTT CAACGTACAG
CGGGTTGAAG TATTAAAAGG CCCTGCATCG GCACTCTATG GCGGTGGCGA ACCCGGCGGC
ATGATTAACT ATGTCACCAA AAAACCAACC TTTGTCGAGC GTAAAGAGCT CACCCTAAGC
ACGGGCAGCT ACGACATGAT GGGCGGCTCG CTGGATTTCA CCGGCGGCTT AACCGAGGAT
TTAGCCTATC GATTGGGAGG CTATTATCAA CAGGAAGATA GCTTCCGTAA CAATGCCGAT
AGTTTAAATG CCGAAGTAGC AGGTGGCTTA CTGTATGAAA TCAGTGACGA TACTAAGCTG
ACCACCACAT TCGATCTGAT AAGACAGGAC TTGGGCGGTA ATCGACTCCG TGGTGTACCC
GTGGATGATG CGGGGAATTT CCTCGTTGAC CCTTCCTACA ATGCCAACGA GAAGAGCGAC
TTCCAGAAAA TGGATGCCTT GGTGCTGCAA GCGATTCTCG ATCATCAATT TAGTGATGAT
TTTTCGGTAA AAACTCAAAT TCGTTATCTG AATAATGAAT CCGATCAGCA ATATCACGAA
TCCCGTGGCT GGGTCGATGT GAACGGTGAT GGTAAGGCAA ACAGCGCAGA TGGCACCATC
AAACGTGAAT ATCGTGTCCA ATCCCGTGCC AATGACGAAA TCAGTTTAAC CAACGATTTT
GTCTATCGCT TTAATGCCTT AGGTTTTGAA CATGAGTTCC TGTTTGGTGG TGATTATCAC
TATGTCGAAA CCGAATACCA TTACAAGTTG GCGACCAGCA AGGAAGGCGT GGGTAATCTC
TATATCTTTG AGCTGAATTA CGGTGAAACA AATCCGAGTA CTTACCAATT AAAAGACATG
GATACCGACG GTACCCGCTC CAACCGTTTT GGCCTTTATC TGCAAGAACA TCTGCATTTC
AACGAGCAGT GGTCTTTAAT TGCGGGTCTA CGCTTTAGCC AGTTTGATGA TTACGACAAA
AAGACCGGAT TCTCCTTTAG CGATAATGCC ATTACCCCAA GGGCTGGGCT GAATTATCGT
CCAATCGAAT CTATGTCTTT CTATCTGAAC TACTCAGAGA GTTTCAATCC GGCATCATTG
TCGGATCAAG AGAGTATTAA AAGTGACGGC GCACTCGATC CCGAAACCGG TAATCAAATA
GAGCTTGGGA TGAAAAACGA GTGGCTTGAT GGCCAGTTTA TGACCACGCT CGCACTCTAT
CGTATTGAAA AACAAAATGT GGCCCAGGCA AACCCTCTAG ATACCGGCGA TGACGATGGT
ATTCCTAACT TAGTCAATTT AGGCGAAGTA CGTAGCCAAG GGGTAGAATG GACGCTGGTG
GGGGATCTTA CGGATAACCT TACCGTAACG GCCAACTATG CCTATAACGA TACCCAAGTG
ATTAAAGGCG TGATCAACGA CAGCCTAACC AACACCTTTG GTGACGGCAA ACATTTTGCC
AATGCGCCGC GTCATCAAGC GGGGCTGTGG ACACGTTACG ATATTCAAGC GATTGATTCG
GCCATTGCTT TTGGGATGGA CTATGTGGGC GAGCAATTTA GCCTCAATGG TCAAACGGTG
AAACCCCATA CAGTGTTTGA TATGAGCTGG ACGACCCAAT GGGACCAAAC CCAAGTGCGC
TTAAATCTGA AGAATATCTT CGACAAGGAA TATGCTGTTA GCGGATTTAG TGAGCGCAAT
GGCCATTTCC CCGGTGAGCC ACGTAATGTC ACCTTGGAGT TGACCCATAA GTTCTAG
|
|---|
| Protein sequence | MKSRFAYSIL TLALMPHLVF AAAPNAQERQ PEQESVSTAQ AAIQTNTQAE AQAETKAPER
IVVRGRAMQM YVDKETEIGT KTAINVMELP QSVQVLTEQL IDDQAARNIT DLYRSIAGVS
EFSYSGVTFR GFRDDANVFY DGVRGDPYSG FSVPQLFNVQ RVEVLKGPAS ALYGGGEPGG
MINYVTKKPT FVERKELTLS TGSYDMMGGS LDFTGGLTED LAYRLGGYYQ QEDSFRNNAD
SLNAEVAGGL LYEISDDTKL TTTFDLIRQD LGGNRLRGVP VDDAGNFLVD PSYNANEKSD
FQKMDALVLQ AILDHQFSDD FSVKTQIRYL NNESDQQYHE SRGWVDVNGD GKANSADGTI
KREYRVQSRA NDEISLTNDF VYRFNALGFE HEFLFGGDYH YVETEYHYKL ATSKEGVGNL
YIFELNYGET NPSTYQLKDM DTDGTRSNRF GLYLQEHLHF NEQWSLIAGL RFSQFDDYDK
KTGFSFSDNA ITPRAGLNYR PIESMSFYLN YSESFNPASL SDQESIKSDG ALDPETGNQI
ELGMKNEWLD GQFMTTLALY RIEKQNVAQA NPLDTGDDDG IPNLVNLGEV RSQGVEWTLV
GDLTDNLTVT ANYAYNDTQV IKGVINDSLT NTFGDGKHFA NAPRHQAGLW TRYDIQAIDS
AIAFGMDYVG EQFSLNGQTV KPHTVFDMSW TTQWDQTQVR LNLKNIFDKE YAVSGFSERN
GHFPGEPRNV TLELTHKF
|
|---|
| |