| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2412 |
|---|
| Symbol | |
|---|
| ID | 4477220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2892127 |
|---|
| End bp | 2892819 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639727009 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_870047 |
|---|
| Protein GI | 117920855 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000515704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTA TCGCCATTGT GGAAGATGAA GCGGCCATTC GCGAAAATTA CAAGGATGTG
TTGCAGCAAC ACGGTTACAG TGTGCAAACC TATGCCGACA GGCCATCGGC CATGTTGGCG
TTTAATACCC GTCTGCCGGA TTTAGCCATT ATCGATATCG GCCTTGGCAA TGAGATTGAC
GGCGGTTTTA TGCTGTGTCA GTCCCTGCGC GCCATGTCGA GCACTTTGCC GATCATCTTC
TTAACCGCGC GGGATAGCGA TTTTGATACT GTGTGCGGCC TGCGTTTAGG CGCCGATGAT
TACCTGAGCA AAGAAGTGAG CTTCCCCCAT TTGACCGCGC GTTTAGCCGC ACTGTTTCGC
CGCTCTGAGC TAGCCACCAG CCAAACGCCG CAGGAAAATT TACTGGAGCG CGGACCGCTC
ACCATCGACG CCAATCGGAT GCAGGTTTCT TGGAACCAGA TCCCGATTGA ACTCACAGTC
ACCGAGTTTT GGATGGTGCA CGCCCTTGCC AAGCACCCGG GGCACGTCCG TAGCCGCCAT
GAGCTAATGC AAGAGGCGAA GATTTTTGTC GATGACAGCA CTATTACTTC CCATGTGAAG
CGAATCCGTA AGAAATTTAT GGCCGCCGCG CCCGAATTTG ATTGTATTGA TACCGTTTAT
GGCATGGGCT ATCGCTGGGA CAGCCTAGCC TAA
|
|---|
| Protein sequence | MKRIAIVEDE AAIRENYKDV LQQHGYSVQT YADRPSAMLA FNTRLPDLAI IDIGLGNEID
GGFMLCQSLR AMSSTLPIIF LTARDSDFDT VCGLRLGADD YLSKEVSFPH LTARLAALFR
RSELATSQTP QENLLERGPL TIDANRMQVS WNQIPIELTV TEFWMVHALA KHPGHVRSRH
ELMQEAKIFV DDSTITSHVK RIRKKFMAAA PEFDCIDTVY GMGYRWDSLA
|
|---|
| |