Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2408 |
Symbol | |
ID | 4477216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2886847 |
End bp | 2887872 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639727005 |
Product | diguanylate cyclase |
Protein accession | YP_870043 |
Protein GI | 117920851 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.62942 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACGAG ATTTATTACA AACCGCAGCC TTAAATCTTA AAAAAGCGGT TCCCTTAATG CTCAAGCATC AAATTCCCAC CACGCCAATC AATTATGCCC TGTGGTATAC CTACGTGGGC GAACAAAACC CAGCGTTAAA CGCACAGCTT GATACGGTTA TCGCCCACTA CAACACTTGC CCGCCAGTCA GTAGCGAGTT GTTGTTTCGC CAGTATGTCG CCGATCCGGT TGAGTTGGAT GTTCGCGATA TGCGGCTCAA CCTTGAGGCC ATGGCCACTG AGCTGTCGCA ATCGATTCGG GATACCAATC TCGATGCAAC TGAGTTCCAG ACCTGTATTA ACACCAACTT TGCCAAACTC AATGGCATTG AAGAAGGCGC GCTTAGCGTC GAGCAAGTGC TGGATTTAGT GCGTAATTTG GTGAAAGAGT CCGAGAATAT TCGCTCGAGC ACTGAGTATT TCACTTCCCA GTTACAAAAA GCACAGACTG AGATTGATGC GTTAAAACAA AAGCTTGAAA AATCAGAGAA AGATGTACTT TACGATGCAC TCACGGGCTG TTTAAACCGC CGCGCCTTCG ACGCCGACCT CGCCGGCATG TTGGCACAGG CCCCCGAGGG CACCTGTCTT ATCTTGGTCG ATATCGATCA CTTTAAAGCC TTTAACGACA ACTATGGCCA CCAGCTGGGC GATCAAGTAT TAAAAGCTGT ATCAAAGCGT TTGCAGGAAG CCTGTCGGGA TGGTTGTAAG TTGTACCGCT TCGGCGGCGA GGAGTTTGCG ATTATCGTGC CGAAAAGCCA ACTGCGTATT GCGCGGCAAC TGGCCGAGGC CATGCGCCGT GGGCTCGAGA AACTCAGCCT CAAGGATAGG CGCAAAGATC AACGTATCGA CAATATCACC GCCTCCTTCG GTGTCGCCCA GTGGCAGGAA AAACAAGTGG CTATTCACCT CATCGAAAGA GCGGATATGC TACTTTATGA AGCCAAACGC TTAGGTCGAA ATCGGGTGAT GCCGATGAGC AACTAG
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Protein sequence | MSRDLLQTAA LNLKKAVPLM LKHQIPTTPI NYALWYTYVG EQNPALNAQL DTVIAHYNTC PPVSSELLFR QYVADPVELD VRDMRLNLEA MATELSQSIR DTNLDATEFQ TCINTNFAKL NGIEEGALSV EQVLDLVRNL VKESENIRSS TEYFTSQLQK AQTEIDALKQ KLEKSEKDVL YDALTGCLNR RAFDADLAGM LAQAPEGTCL ILVDIDHFKA FNDNYGHQLG DQVLKAVSKR LQEACRDGCK LYRFGGEEFA IIVPKSQLRI ARQLAEAMRR GLEKLSLKDR RKDQRIDNIT ASFGVAQWQE KQVAIHLIER ADMLLYEAKR LGRNRVMPMS N
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