| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2407 |
|---|
| Symbol | |
|---|
| ID | 4477215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2885061 |
|---|
| End bp | 2886686 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727004 |
|---|
| Product | peptidase M28 |
|---|
| Protein accession | YP_870042 |
|---|
| Protein GI | 117920850 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2234] Predicted aminopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.438723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAATAA CTTGGGAGAA AGTCTTGAAA AATTTCATCC TTGCCGGTGC CCTAGGTTCC
TTACTGTCAC TGCCTGCTAT GGCCGCATCT TCCTTCAGTG ATAGCCTGGA TCTCGGCCAG
TATCGCACCG ACGTTAAAAC CTTAGCCAGT GATGCCTTCG GCGGTCGCGC GCCCTTATCT
GAAGGCGAGC AACTGACGAT TGATTACCTT GAGAAGGCCT TTAAAGAGAT GGGGCTTAAG
CCTGGGTTTG GCGACAGCTA TTTGCAGGCG GTACCGCTAG CGAAAATCAC CGCCGATCAA
AACATGCAAC TGGATATCGG CGGACTCAAG TTTGCCAATG GCAGCGAATT TACCGCCAGA
ACCCAGAGAA TTAGCGATAA AGTCAACCTC AGTAATAGCG ATGTGGTGTT TGTCGGTTAT
GGCATCAATG CGCCTGAATA TGGTTGGAAT GACTATCAGG GCCTCGATGT CAAAGGCAAA
ACCGTGATTG TGCTCGTCAA TGACCCAGGT TTTGCGACTC AAGATCCCAA GGTCTTTAAA
GGCAATGCCA TGACCTACTA TGGTCGCTGG ACTTACAAAT ACGAAGAGGC CGCGCGTCAA
GGCGCCGAAG CTGTATTTAT CGTCCATGAG ACGGCACCTG CCGCCTATGG CTGGGGCGTG
GTGCAAAACT CCAATACTGG CACTAAATTC ACCTTGATCG ATGCCAATAA TAATCAAGGG
CAGGTGGGCG TGATGGGCTG GGTGCAACAT GATGTCGCCA ATAAGATTTT TGCTAAGGCC
GGCATGGACT TCGATACCTT AAAGCAACAA GCCGCCAAGC CAAACTTTAA GGCCATTCCC
TTAAAGTTAA AGGCGAATGT GAGTTTAAAT AATACGATTG AGCGCGCCGA ATCCCACAAT
GTGGCGGCAT TGTTGCCCGG CAAGAGTCGC CCCGATGAAG TGGTGATGAT GCATGCTCAT
TGGGATCATC TGGGTACAGT CATTGAAGAT GGTAAGCCAG AGATCATTAA TGGCGCCGTG
GATAACGCCA GTGGTGTGGC GGGAGTGTTA GCACTGGCGC GTTACTTTGC TAAACAAGCG
CAAAGTGCGC CGCTTGAGCG TTCGATTCTG TTTAGTGCCT TTACTGCCGA GGAAACTGGC
TTGATCGGCG CCCAGCACTT TGCCCAGCAT CCGAGTGTGC CGACCAAAAA TATCGTGTCG
TTTTTGAATA TCGACGGCAT GAATATGAAC CAAGGTGTGG ATTATATTCT GCGCTACGGT
GAGGGTGTGT CTGAATTAGA AAACTATTTG AACAAGGCCG CTAAGGCGCA GGGACGGGTG
GTGAAGGGCG ATCCAAGACC ACAAAATGGT TTGATGTTTA GATCGGACCA CTTCGCGCTG
GCCCAACAAG GCGTGCCCGG CTTGTTATTT ATGAGCCTTG GGGATACGGA TCCTGACTAT
ATTGCCCACA AATACCACAA GGGCGCCGAT GATTATGATC CTAACTGGAC CCTCGAAGGG
GTGAAGCAGG ATTTAGAGCT GATGGCGAGC ATGCTAACCA CCTTAGCCAA TGGCACCGAT
TGGCCACATT GGTTAGAGGC ATCAGACTTT AAGACCAAGC GTGAGCAAGA CGGTCGGAAA
AAGTAA
|
|---|
| Protein sequence | MIITWEKVLK NFILAGALGS LLSLPAMAAS SFSDSLDLGQ YRTDVKTLAS DAFGGRAPLS
EGEQLTIDYL EKAFKEMGLK PGFGDSYLQA VPLAKITADQ NMQLDIGGLK FANGSEFTAR
TQRISDKVNL SNSDVVFVGY GINAPEYGWN DYQGLDVKGK TVIVLVNDPG FATQDPKVFK
GNAMTYYGRW TYKYEEAARQ GAEAVFIVHE TAPAAYGWGV VQNSNTGTKF TLIDANNNQG
QVGVMGWVQH DVANKIFAKA GMDFDTLKQQ AAKPNFKAIP LKLKANVSLN NTIERAESHN
VAALLPGKSR PDEVVMMHAH WDHLGTVIED GKPEIINGAV DNASGVAGVL ALARYFAKQA
QSAPLERSIL FSAFTAEETG LIGAQHFAQH PSVPTKNIVS FLNIDGMNMN QGVDYILRYG
EGVSELENYL NKAAKAQGRV VKGDPRPQNG LMFRSDHFAL AQQGVPGLLF MSLGDTDPDY
IAHKYHKGAD DYDPNWTLEG VKQDLELMAS MLTTLANGTD WPHWLEASDF KTKREQDGRK
K
|
|---|
| |