| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2401 |
|---|
| Symbol | |
|---|
| ID | 4477209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2879692 |
|---|
| End bp | 2880606 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726998 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | YP_870036 |
|---|
| Protein GI | 117920844 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.980486 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTTA CAACTCGCTT ACAATTTTTA ACATTTGCAT TTGTGCTGCG TGTCGCTGTT
TTCTTCGGTC TTTACTGCGG AATTTGCGGC TTATTCATGG CTGTGAGTGA CGCCAATCCC
GAAGCACCGA ATATTCAATT AGCGACAGAG TTTTCAAAGG AGAAGAGTGC CCACATCAGT
GATTTTCTTG TCAGCGAAAA ACTCGATGGT GTGCGCGGTT ATTGGGATGG CAAACGCTTA
ATGACTCGTC AGGGCAATCC CATCTTAGCG CCTAGTTGGT TTACTGCGGA TTTTCCGCCC
ACCCCGATGG ACGGTGAATT ATGGCTCGGG CGAGGGCGGT TTGAGGCCAT ATCAGGGCTG
ATTCGCCAAG CGTCCGCGAA TGAGAGCGAG TGGCAGAATG TGCGTTTTAT GGTGTTTGAT
TTACCCAAGG CGCAAGGGAG TTTTGCAGCG CGGTATCAGC AGATGCAAAC CTTGATTGCA
GGTAAATCGG TTTACCTGCA AGTGATTGAA CAAGTGAGCG TAGAAAGTGT CGAGGCGCTG
TATCAGAAAT TAGACACCTT AGTGGCTCAG GGTGGTGAAG GCTTAATCCT GCATCGACGC
ACGGCGTTAT ATACGCCGGG TCGTAATCCT AACGTGATGA AGTTAAAGCC CTATTTAGAT
GCTGAGGCCA AAGTGATTGG CCATATAGCG GGTAAAGGAC AGTTTGCCGG GCAACTGGGC
GCATTGAGAG TGCAAACAGC TGATGGCCGT GTTTTTAGTA TTGGCACGGG TTTTAGCTTG
GCCGAGCGTC AGCATCCGCC CGCGATTGGT ACGCTTATCA CTTACAAATA TCTTGGATTA
ACCGTCAATG GCTTACCGCG CTTTGCGAGC TTCTTGCGGA TAAGAAGTGA CATGCCGCCA
GAGAATAAAG AATAG
|
|---|
| Protein sequence | MTLTTRLQFL TFAFVLRVAV FFGLYCGICG LFMAVSDANP EAPNIQLATE FSKEKSAHIS
DFLVSEKLDG VRGYWDGKRL MTRQGNPILA PSWFTADFPP TPMDGELWLG RGRFEAISGL
IRQASANESE WQNVRFMVFD LPKAQGSFAA RYQQMQTLIA GKSVYLQVIE QVSVESVEAL
YQKLDTLVAQ GGEGLILHRR TALYTPGRNP NVMKLKPYLD AEAKVIGHIA GKGQFAGQLG
ALRVQTADGR VFSIGTGFSL AERQHPPAIG TLITYKYLGL TVNGLPRFAS FLRIRSDMPP
ENKE
|
|---|
| |