| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2375 |
|---|
| Symbol | |
|---|
| ID | 4479610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2853786 |
|---|
| End bp | 2855576 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639726972 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_870010 |
|---|
| Protein GI | 117920818 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.151878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0787288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA CCGCCATCTC TCTTGCGATC TTGTTATCGC TCACAGGCCT TGCGGGTTGC
CAATCGCAAT CAACTCAAGT GTCAGCCGAT ACCGCCAAAT CAAGCGCAGT CAGTGCTGAT
GTGAAGACCA GCGCCTTTGC ACAATTTAGC CAGACCTTTA TCGATGATCT GTGGCAATTA
GCGCCAACCT GGGCACTCTA CAGCGGCAAA CACGTTAATG ATGGCTATTT AGAAATCCCC
AATGAAGCGA GCCGTGTTAA GACGCTTGCC TTTGTGAAAG CCCAGCAGGC AAAGCTGAAA
CAGTTTGAGC TTAAGTCCCT GACTTCTAAT GAAACCATAG ATTATCACTT AATTGATAAT
CTGCTAAACA GCATGGCGTG GGAAATCACC GACTTTAAAT CATGGCAATG GGATCCCTCG
AGCTATAACG TGGCGGGCGG TTTTGCACAA ATCATCAATG AAAACTTTGC GCCACTGGAT
GACAGATTAC GCTCCGTATT GGCCAGAATG GAAAATATCC CCGCTTATTA CGCCGCGGCG
CGCAGCAATA TTCAGCAGCC AACCCTAGAA CACAGCGAAT TGGCTGTGAT GCAAAACCAA
GGTGCGTTTT CGGTATTCTC CGATGATTTA TTGAAGCAAG TAGCGGATTC GGGTCTGTCG
GATGCGGAAA AATCGCTGTT TAAATCCCGT TTCGACACGG CAACGAAAGC GATTAATGAA
CATATTACTT GGTTAAATGC ACAAGTCAGC CAACTTAAAA AAGACGGCGC CCGCAGCTTT
AGAATTGGTG AAGAATTATA CGAGCAAAAG TTTGCCTTTG ATATCCAAGC GGGCATGACA
GCAAAACAGC TTTATCAAAA AGCCATGGCG GATAAAGAAA GAGTGCAAGG TGAAATGGCG
AAGATCACCG ACAAGCTGTG GCCAAAATAT TTCACTACGC CAAAACCTGC CGACAATAAA
ATCGCAATTC GCCAATTGAT TGATAAATTA TCGACACAGC ACGTTAAGCG TGATGACTTT
GTGAGCGAAG TGCGTAAGCA AATTCCTGAG TTGATTGAAT TTGTAAATAA AAAAGACTTA
GTGACCTTAG ATCCTAAAAA ACCATTAGTC GTGCGTGAAA CCCCTGAGTA TATGCGTGGT
TATGCGGGAG CGTCGATTAG TGCGCCTGGT CCTTATGATA AATTAGGCAA TACCTATTAT
AACGTCACAC CACTCGATGG TATGAGTGAT GAATCCGCTG AAAGCTATTT ACGCGAATAT
AACCACTGGA TATTACAGAT TTTAAATATC CATGAGGCGA TTCCTGGACA CTACACCCAA
TTAGTTTATT CCAATGAGTC ACCAAGCTTA GTGAAAAGCT TATTTGGTAA TGGCGCTATG
GTCGAAGGTT GGGCCGTTTA TACCGAACGC ATGATGCTTG AAGAAGGTTA TGGAAATTTC
GAGCCTGAAA TGTGGTTAAT GTATTACAAG TGGAATTTAC GTGTTATCTG TAACACCATC
TTAGACTACA GCATTCATGT TAAAGGCATG ACTGAAGAGC AAGCCATTAG CCTGATGATG
GATGAAGCGT TCCAGCAACG TGCTGAGGCG GAAGGCAAAT GGCGCCGTGC CACCCTAAGC
CAAGTGCAGC TGACCAGTTA CTACTCGGGT TACCGTGAAA TTTACGATTT CCGAGAAGAA
TATAAGCAAC TTAAAGGCAA GGATTTTGAC CTAAAAGCAT TCCATGAGAA GTTCTTAAGT
TATGGTAGTG CGCCGGTGAA ATATATTCGC CAATTAATGT TAGAGCAGTA A
|
|---|
| Protein sequence | MKKTAISLAI LLSLTGLAGC QSQSTQVSAD TAKSSAVSAD VKTSAFAQFS QTFIDDLWQL
APTWALYSGK HVNDGYLEIP NEASRVKTLA FVKAQQAKLK QFELKSLTSN ETIDYHLIDN
LLNSMAWEIT DFKSWQWDPS SYNVAGGFAQ IINENFAPLD DRLRSVLARM ENIPAYYAAA
RSNIQQPTLE HSELAVMQNQ GAFSVFSDDL LKQVADSGLS DAEKSLFKSR FDTATKAINE
HITWLNAQVS QLKKDGARSF RIGEELYEQK FAFDIQAGMT AKQLYQKAMA DKERVQGEMA
KITDKLWPKY FTTPKPADNK IAIRQLIDKL STQHVKRDDF VSEVRKQIPE LIEFVNKKDL
VTLDPKKPLV VRETPEYMRG YAGASISAPG PYDKLGNTYY NVTPLDGMSD ESAESYLREY
NHWILQILNI HEAIPGHYTQ LVYSNESPSL VKSLFGNGAM VEGWAVYTER MMLEEGYGNF
EPEMWLMYYK WNLRVICNTI LDYSIHVKGM TEEQAISLMM DEAFQQRAEA EGKWRRATLS
QVQLTSYYSG YREIYDFREE YKQLKGKDFD LKAFHEKFLS YGSAPVKYIR QLMLEQ
|
|---|
| |