| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2354 |
|---|
| Symbol | |
|---|
| ID | 4479587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2831908 |
|---|
| End bp | 2835000 |
|---|
| Gene Length | 3093 bp |
|---|
| Protein Length | 1030 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639726949 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_869989 |
|---|
| Protein GI | 117920797 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.322733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000760795 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACC CGCTGATCCT TCCACATGAA CAGAAATCCC TAGTACGGTT ATTGGGGCAT
CAGTCCAGAA CGGCTGCTCG GCAAAAAAGT CATATAACGA TAATAAAACA AGCTCTGGCC
GTACTTGAAC ATCATCTACC TGAACTGTTT GAAACACCAC CGAAATACGA CCGATTTTCG
GCAGTTTGGC CACAGGTTGA CTCAGATCTG CGAAAGGTCC TCAAAACGGA AACAGCCTAC
CGCCGAGGAT ATGCTTTTAT CTGCAGGCAA CTAGAAACGG GTAACCGACA AGGGCTTTGG
CAGATCAATC CTCCCTCAGA CTATCTCACG CTTCGTAGAG TTCGACCGCT TAGAAATTTG
ACCTGGCAAC ACAATACTTC TGTTTTCGCA TCAAAAATTG ACGGTTTGCT AGAGAAGCTT
GATAAAACAT CCGATCCCCA ACAATGCTTT GCCAGATTGC TGATGAGTTG CATTTGCTAT
AGTGGCCTGA ATCGACCTAG GCTATGGCCC GCGCTGGCGA AGGCATTAAA TAGCGATAAA
CCATTAAATG GCAATAAAGA CCTTTGCTGG CTAACGTTGA GACCAAGTCC AGGGCAGAAC
TTTGCCAGTA ATCTTTACAC CGTTCAAGAC GATTTTGAAC CTAATAAAGC TCAGGTCGAG
GTTCATTTTT TCCCCGATCC AATAAGTCTC GGGCTAATAA AGCCATTTCT AAACAGCCGA
ACAAGAAGTT GGCGCCCCCC AAAATCAGTC AAACAATGTT TAGAGATAAT TAAGTCAGAA
CTTAAACTCA TTCTTCCAAA AAAACAGTTT CAGCAAGGTG GGATTTGTTT TGCAGAGGCT
CAGCCTAATG TCGAGTTACC ACAAGTGTTG GTAGAGTATT CCTTGGGACG TCAAAAAAGC
GCATCCCTAC CCAATGCCTA CTGGTTAAGA TTATTTAAAG GTGCAACGGG ACCTTGCAAC
GTAAGAAGCT TTGCTCAATT CAAGAAATGG TATAATTCAA TACAAACAGA CTCTTCAGTA
ACATCGCCAT CACACCGTTT TAAGCTAGGT AACCGATACC TGCTTAACCA AATAAGAGAA
ATATTTAAGC AGAATAACGC CAATCCCCAA GGAAAGCGCC AAGTTGTTCT TCATTTACAA
GAACTAACAC AAGCAAGCCT CTGCCCTAAC GAAGAGATCC TGCTTCAATG GCTCATTCAC
CACCTGACTA CTGAGAAAAA TGAAGTATCA ACAGCGAATA GGTACTTTGG AGCAATTGGA
GGCCACTGGT TGGCTGCGAC CGCAGACATT GACTTATACA GCCTAAGCAG TGAAGACTTT
ATCGATATTT ATCAAGAAAT AATGAATCGC ACTGATAGTC AACATGAACT GCACTATAAA
GCTCGTCGGT TTGAGAACCT ACATTTATTC GCACAACAGA GATTTGATCT CCCTCCTCTT
AATCAGCCAC TCAGCGAAGG CAGCAATATT ACTCCCCATG TAAGTGCAGC CATTGTTGAT
GAGCCACTGT TTTCGGCCCT GCTTCGCCAA ATCGATTACA TAGACGATTT AGACCATGCA
GCCCAACGGA TGTTAAAATG CTATTTGCTC ATTGCCTATC GTACAGGTCT CAGACCCGGT
GAAGTCGCCA AACTGCGTCT AAAAGACATT GAGCCTTCCT CTATCGGCTG GCTATTTATT
CGTGAAAGCC GCCACGGGCA TAACAAAACC GACTCTGCGC TTCGAAAAGT GCCTTTATTT
CCTTTGTTGA CCGACAACGA AAAAAGTTTA ATGGAAAGCT ATCTTAGGGA TCGCCTTATC
GCTTGCCATA AACGTTATAA CGAATTGCTC TTTCACGAAG AGGCTAATCC CTTTCACGTT
GTCAATACAG GTCAAATATC CTTGATGGTG AAAGAGATAT TGTCTCAGTT AACCGGCGGA
ATTTACTATC GTCTATATCA TCTTCGCCAT ACAGCATTGT CCAGACTTCA ACTCCTTGCC
CATGATGACT TAATCACATT ACCTGAAGTT ATCAAGACGA TGTTGCCATA CCCACCGTCA
CAAAAAAGGA TAATATCTAA ACTGATATTT GGTGAAAACC GGTTACGAGA CAGATATTCT
GCGCTGGCAG TGTTTGCTGG CCATAGCAGT CCAGACACCA CATTCAGAAA CTATCTACAT
TTTACCGATT TACTGCTGGG CTGCCATTTG GCAATAAACG CTCAAGAAAT ACCTGAATAC
ACCGCAAATA ATGTACTTGG AGTACGCCCA CACCGTTATA AAGTGATGCA AAAATCAGGA
AACATCACTC CTGTGCGTTT GCTGCCATTT TTTAGAAAGC GGCTAGTCCC TTTTATGGGC
ACGGTGAGCG GCATTCGCCA AAGTACAATC CGCCAGAAAA ATGAGGTTGT AAAAAGCAGT
CACTACAATC AAGCCTTGGC GGTACTCAGG AGTATTGATC TAGGTCATGA CTATCAAGAC
GTTGCTTTTC AGTATCGCCT CACTCCTGAA CGCGTCAAAC GCTGGATAGA TGCAGCAACT
GCACTTCGGA TGTTAAAAAC ACCACGAGAC ATTGGCCGAT TATTTTCAAG CAGACGTTGT
AATGCGCTGC TACCTGCAGA TCCCATTGAC ATTTCTGTTC GAAAGGATAT TTATTCAGCC
CTACAAGTAT GTCGCGAACT CAAGTCGAGT CAGAAAGGAA ACGTCGAACT ACAATGGGCT
ATTCAGTATT ACTTAACGCA TACAACCAGC AGTAACCCGT CGATTTTCTT TAACAAAACA
ATAGAGTTTC AGCGATTTAT GGCTGTGGTA AGCAAGCTTT TTACTTGGAA GCGCTGGCAC
CTTAGACTGC ATTATCAATA TGGAAAACCC TATAATCTGT GGAAATGCCA CCGCAACCTT
CAGATAACCT GCTACACGTT ACAGAAAATA AATGAATATC CAGAAGGAGC TGGATCATTA
TTTTTACATC ATGCCAATGA ACAAAAGCAC ATAAAAACAC GCGGCGACAA AGCAATAAGC
CAATATTCCT CCCCGGCACT GAAAATCTTA TTCCACCAGC TGGCGATTAT CCTGTTCAAA
GCGGAGCAAA TAAAGCAATG GGAACAGAGT TAA
|
|---|
| Protein sequence | MENPLILPHE QKSLVRLLGH QSRTAARQKS HITIIKQALA VLEHHLPELF ETPPKYDRFS
AVWPQVDSDL RKVLKTETAY RRGYAFICRQ LETGNRQGLW QINPPSDYLT LRRVRPLRNL
TWQHNTSVFA SKIDGLLEKL DKTSDPQQCF ARLLMSCICY SGLNRPRLWP ALAKALNSDK
PLNGNKDLCW LTLRPSPGQN FASNLYTVQD DFEPNKAQVE VHFFPDPISL GLIKPFLNSR
TRSWRPPKSV KQCLEIIKSE LKLILPKKQF QQGGICFAEA QPNVELPQVL VEYSLGRQKS
ASLPNAYWLR LFKGATGPCN VRSFAQFKKW YNSIQTDSSV TSPSHRFKLG NRYLLNQIRE
IFKQNNANPQ GKRQVVLHLQ ELTQASLCPN EEILLQWLIH HLTTEKNEVS TANRYFGAIG
GHWLAATADI DLYSLSSEDF IDIYQEIMNR TDSQHELHYK ARRFENLHLF AQQRFDLPPL
NQPLSEGSNI TPHVSAAIVD EPLFSALLRQ IDYIDDLDHA AQRMLKCYLL IAYRTGLRPG
EVAKLRLKDI EPSSIGWLFI RESRHGHNKT DSALRKVPLF PLLTDNEKSL MESYLRDRLI
ACHKRYNELL FHEEANPFHV VNTGQISLMV KEILSQLTGG IYYRLYHLRH TALSRLQLLA
HDDLITLPEV IKTMLPYPPS QKRIISKLIF GENRLRDRYS ALAVFAGHSS PDTTFRNYLH
FTDLLLGCHL AINAQEIPEY TANNVLGVRP HRYKVMQKSG NITPVRLLPF FRKRLVPFMG
TVSGIRQSTI RQKNEVVKSS HYNQALAVLR SIDLGHDYQD VAFQYRLTPE RVKRWIDAAT
ALRMLKTPRD IGRLFSSRRC NALLPADPID ISVRKDIYSA LQVCRELKSS QKGNVELQWA
IQYYLTHTTS SNPSIFFNKT IEFQRFMAVV SKLFTWKRWH LRLHYQYGKP YNLWKCHRNL
QITCYTLQKI NEYPEGAGSL FLHHANEQKH IKTRGDKAIS QYSSPALKIL FHQLAIILFK
AEQIKQWEQS
|
|---|
| |