Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2308 |
Symbol | |
ID | 4478065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 2773278 |
End bp | 2775536 |
Gene Length | 2259 bp |
Protein Length | 752 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639726903 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_869943 |
Protein GI | 117920751 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.245361 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGAAG GAATTGCGGT TACGGGCACT ATCGGCGAGA TTAATGCTCA GTTTAATCAA AGTGTTAGCT TAGAATGTTA TAACGGCATC TTGTCTATGC TGCTCAATGG CGCGCCATTA GCAGAAATCC TCCATGCTCT AGTCTTAAAA ATTGAAGATC AGCGTTTAGG CACGCATGCC TCCGTATTGC TACTCAGCGA AGACGGCAAA AAGCTGCTCA CGGGCGCCGC GCCCCATTTA CCCGTCAGTT ATAACCAAGT CATTCATGGG GTCGAAATTG GTCCTGGGGT TGGCTCCTGC GGTACCGCGG CGTTTACGGG GCAGCGGGTG ATTGTCGATG ACATTGAACA TCATCCCTAT TGGGCGCCGT ACAAAGAGTT TGCATTAACC CACGGGCTGA GGGCCTGTTG GTCTGAGCCT ATCAAAGATA CTCAAGGCAA GGTCCTCGGC ACCTTTGCCA TGTATTATGA AACCGTAAAA GTACCGACGG CCGCGGATTT AACCTTGATT TCTGAGGCGG CAAGGCTGGC GAGTTTAGCG GTAGAGCGCA GTCGGTCACT CGAGTTTCAG CGCCTTGCGG TGAAAATATT TGATCGCCTA CCTCTGTCGT TAGTCATCAC CAATGCCAGC CATTCCGTGC TCTATGCAAA CGATGCGTTT ACCCAGATGG TTTATCCTAA AACCACTGAT ATTCATGATT TTTGCCCTGA ACACTTTTTC TCTCCCTCTG AGCCCCACGA AATCGATTCC CTGTTTCAAC ATCTGTCCGA GGGGAAAATG TGGCAGGGTG AGTTGATTGG CCTGCGTAAT AACGGTGAAA CCTTTTACCT CGATTTAACC GTGACCGTGT TTCGCGAGCC CCATAGCAAC GAGAATAGTT TTGCTTGGTT ATTTTCCGAT ATCAGTGAGC GTAAAAAGGC GGCGCAGTTA ATTAAGTATC AAGCCAACAA TGATCCCCTC ACTGGCTTGG CAAACCGTAA TGCCTTGTTT AGACAAATCC AAGAGCTGAT ATCCGCCGAC AGCTTAACCC CTGGTTTTAG CTTTATGCTG ATGGATTTAG ATAACTTTAA ACAAGTGAAC GATACCTATG GTCACGACAA AGGGGATGCG CTGCTGGTGC AGGTCGTGGA GCAGATTAAG ACCTGTTTGA ATGAGCAAGC GGTATTTGCC CGTTTAGGGG GCGATGAGTT TGCGCTGTTG CTTCCGGGCC TTGTGACACA AAGAGAATTG TCACAGCTTG CTGATAAGAT TAATAAACGT GTGTATCAAC GTTATGAATT GTCCCATGAT AAGGGCGTAT ATAGCTCGGT GAGTATTGGG ATCGCGCGCT TTCCCGAGGA TGCGTTGGAT CTGGAGCAGC TGTTGAACTG CGCCGATCAG GCCATGTATA TCTCCAAGGC GGATGGCCGT AACCGTTACC ATTTTTTCAC CGAGCAAATG CAGCAAAATG CCGAGCGCAT TGCGAATTTG CATACACTGC TGAAACAAGC CTTAGAACAA GAAGCCTTCG AGCTATATTT TCAGCCGATT GTGGATGCGA CAACAGGGCT TGTTCAGCGC GCCGAAGTGC TACTGCGTTG GCAGCACGAG GGGCAGTTTA TTTCCCCCGA TGAGTTTATT CCCATCGCCG AGAACAGCGG TTTAATCGTT AACATTGGTC GCTATGTACG CAAAGCCGTG ATGCAAACCA TCATCGATAT GCAAGTTCTA GGCTGGCCAA TCAATTTAGC GGTGAACGTG TCGACCTTTG AGTTTTGGTC CCACGAGTTG CAGGATGCGT TTTGTGACTC CTTTGCCGAT ATTATCGAAG AGCTGGGGTT AATTGAGTTT CCCTACGAGC TTATCACCTT AGAAATCACT GAATCGCTGT TGATGAAACA GCATGTGCAT TTAATCCAAG TGCTGAACGA GTTACGCGGA CGAGGCATTA AAATCTCCCT CGATGACTTT GGTACCGGTT ATTCTTCCTT ATCCTATTTG GCGAATTTTC CTATCGATCA AATCAAAATC GATAAGAGTT TTATCGATAG GTTAGATGAA GGGGAGCGCC ATCTCGCATT GATAGAGGCG ATTGTGCGCT TAAGTCATGC GCTGAATTTG AGTGTGACGG CAGAAGGGGT CGAAACCCAG GCGCAGCTTA AGGTGATGAT GGAAAACCAT ATTCAAGAAA TTCAAGGCTA TATCTTTTAT AAGCCCATGC CCAAGGCGGC ATTTTTTGAG TTACTTGCCG AGCAGGCTGC GGCTCATCAC CATTCATAA
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Protein sequence | MDEGIAVTGT IGEINAQFNQ SVSLECYNGI LSMLLNGAPL AEILHALVLK IEDQRLGTHA SVLLLSEDGK KLLTGAAPHL PVSYNQVIHG VEIGPGVGSC GTAAFTGQRV IVDDIEHHPY WAPYKEFALT HGLRACWSEP IKDTQGKVLG TFAMYYETVK VPTAADLTLI SEAARLASLA VERSRSLEFQ RLAVKIFDRL PLSLVITNAS HSVLYANDAF TQMVYPKTTD IHDFCPEHFF SPSEPHEIDS LFQHLSEGKM WQGELIGLRN NGETFYLDLT VTVFREPHSN ENSFAWLFSD ISERKKAAQL IKYQANNDPL TGLANRNALF RQIQELISAD SLTPGFSFML MDLDNFKQVN DTYGHDKGDA LLVQVVEQIK TCLNEQAVFA RLGGDEFALL LPGLVTQREL SQLADKINKR VYQRYELSHD KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKADGR NRYHFFTEQM QQNAERIANL HTLLKQALEQ EAFELYFQPI VDATTGLVQR AEVLLRWQHE GQFISPDEFI PIAENSGLIV NIGRYVRKAV MQTIIDMQVL GWPINLAVNV STFEFWSHEL QDAFCDSFAD IIEELGLIEF PYELITLEIT ESLLMKQHVH LIQVLNELRG RGIKISLDDF GTGYSSLSYL ANFPIDQIKI DKSFIDRLDE GERHLALIEA IVRLSHALNL SVTAEGVETQ AQLKVMMENH IQEIQGYIFY KPMPKAAFFE LLAEQAAAHH HS
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