Gene Shewana3_2308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2308 
Symbol 
ID4478065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2773278 
End bp2775536 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content48% 
IMG OID639726903 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_869943 
Protein GI117920751 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.245361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGAAG GAATTGCGGT TACGGGCACT ATCGGCGAGA TTAATGCTCA GTTTAATCAA 
AGTGTTAGCT TAGAATGTTA TAACGGCATC TTGTCTATGC TGCTCAATGG CGCGCCATTA
GCAGAAATCC TCCATGCTCT AGTCTTAAAA ATTGAAGATC AGCGTTTAGG CACGCATGCC
TCCGTATTGC TACTCAGCGA AGACGGCAAA AAGCTGCTCA CGGGCGCCGC GCCCCATTTA
CCCGTCAGTT ATAACCAAGT CATTCATGGG GTCGAAATTG GTCCTGGGGT TGGCTCCTGC
GGTACCGCGG CGTTTACGGG GCAGCGGGTG ATTGTCGATG ACATTGAACA TCATCCCTAT
TGGGCGCCGT ACAAAGAGTT TGCATTAACC CACGGGCTGA GGGCCTGTTG GTCTGAGCCT
ATCAAAGATA CTCAAGGCAA GGTCCTCGGC ACCTTTGCCA TGTATTATGA AACCGTAAAA
GTACCGACGG CCGCGGATTT AACCTTGATT TCTGAGGCGG CAAGGCTGGC GAGTTTAGCG
GTAGAGCGCA GTCGGTCACT CGAGTTTCAG CGCCTTGCGG TGAAAATATT TGATCGCCTA
CCTCTGTCGT TAGTCATCAC CAATGCCAGC CATTCCGTGC TCTATGCAAA CGATGCGTTT
ACCCAGATGG TTTATCCTAA AACCACTGAT ATTCATGATT TTTGCCCTGA ACACTTTTTC
TCTCCCTCTG AGCCCCACGA AATCGATTCC CTGTTTCAAC ATCTGTCCGA GGGGAAAATG
TGGCAGGGTG AGTTGATTGG CCTGCGTAAT AACGGTGAAA CCTTTTACCT CGATTTAACC
GTGACCGTGT TTCGCGAGCC CCATAGCAAC GAGAATAGTT TTGCTTGGTT ATTTTCCGAT
ATCAGTGAGC GTAAAAAGGC GGCGCAGTTA ATTAAGTATC AAGCCAACAA TGATCCCCTC
ACTGGCTTGG CAAACCGTAA TGCCTTGTTT AGACAAATCC AAGAGCTGAT ATCCGCCGAC
AGCTTAACCC CTGGTTTTAG CTTTATGCTG ATGGATTTAG ATAACTTTAA ACAAGTGAAC
GATACCTATG GTCACGACAA AGGGGATGCG CTGCTGGTGC AGGTCGTGGA GCAGATTAAG
ACCTGTTTGA ATGAGCAAGC GGTATTTGCC CGTTTAGGGG GCGATGAGTT TGCGCTGTTG
CTTCCGGGCC TTGTGACACA AAGAGAATTG TCACAGCTTG CTGATAAGAT TAATAAACGT
GTGTATCAAC GTTATGAATT GTCCCATGAT AAGGGCGTAT ATAGCTCGGT GAGTATTGGG
ATCGCGCGCT TTCCCGAGGA TGCGTTGGAT CTGGAGCAGC TGTTGAACTG CGCCGATCAG
GCCATGTATA TCTCCAAGGC GGATGGCCGT AACCGTTACC ATTTTTTCAC CGAGCAAATG
CAGCAAAATG CCGAGCGCAT TGCGAATTTG CATACACTGC TGAAACAAGC CTTAGAACAA
GAAGCCTTCG AGCTATATTT TCAGCCGATT GTGGATGCGA CAACAGGGCT TGTTCAGCGC
GCCGAAGTGC TACTGCGTTG GCAGCACGAG GGGCAGTTTA TTTCCCCCGA TGAGTTTATT
CCCATCGCCG AGAACAGCGG TTTAATCGTT AACATTGGTC GCTATGTACG CAAAGCCGTG
ATGCAAACCA TCATCGATAT GCAAGTTCTA GGCTGGCCAA TCAATTTAGC GGTGAACGTG
TCGACCTTTG AGTTTTGGTC CCACGAGTTG CAGGATGCGT TTTGTGACTC CTTTGCCGAT
ATTATCGAAG AGCTGGGGTT AATTGAGTTT CCCTACGAGC TTATCACCTT AGAAATCACT
GAATCGCTGT TGATGAAACA GCATGTGCAT TTAATCCAAG TGCTGAACGA GTTACGCGGA
CGAGGCATTA AAATCTCCCT CGATGACTTT GGTACCGGTT ATTCTTCCTT ATCCTATTTG
GCGAATTTTC CTATCGATCA AATCAAAATC GATAAGAGTT TTATCGATAG GTTAGATGAA
GGGGAGCGCC ATCTCGCATT GATAGAGGCG ATTGTGCGCT TAAGTCATGC GCTGAATTTG
AGTGTGACGG CAGAAGGGGT CGAAACCCAG GCGCAGCTTA AGGTGATGAT GGAAAACCAT
ATTCAAGAAA TTCAAGGCTA TATCTTTTAT AAGCCCATGC CCAAGGCGGC ATTTTTTGAG
TTACTTGCCG AGCAGGCTGC GGCTCATCAC CATTCATAA
 
Protein sequence
MDEGIAVTGT IGEINAQFNQ SVSLECYNGI LSMLLNGAPL AEILHALVLK IEDQRLGTHA 
SVLLLSEDGK KLLTGAAPHL PVSYNQVIHG VEIGPGVGSC GTAAFTGQRV IVDDIEHHPY
WAPYKEFALT HGLRACWSEP IKDTQGKVLG TFAMYYETVK VPTAADLTLI SEAARLASLA
VERSRSLEFQ RLAVKIFDRL PLSLVITNAS HSVLYANDAF TQMVYPKTTD IHDFCPEHFF
SPSEPHEIDS LFQHLSEGKM WQGELIGLRN NGETFYLDLT VTVFREPHSN ENSFAWLFSD
ISERKKAAQL IKYQANNDPL TGLANRNALF RQIQELISAD SLTPGFSFML MDLDNFKQVN
DTYGHDKGDA LLVQVVEQIK TCLNEQAVFA RLGGDEFALL LPGLVTQREL SQLADKINKR
VYQRYELSHD KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKADGR NRYHFFTEQM
QQNAERIANL HTLLKQALEQ EAFELYFQPI VDATTGLVQR AEVLLRWQHE GQFISPDEFI
PIAENSGLIV NIGRYVRKAV MQTIIDMQVL GWPINLAVNV STFEFWSHEL QDAFCDSFAD
IIEELGLIEF PYELITLEIT ESLLMKQHVH LIQVLNELRG RGIKISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLDE GERHLALIEA IVRLSHALNL SVTAEGVETQ AQLKVMMENH
IQEIQGYIFY KPMPKAAFFE LLAEQAAAHH HS