| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2289 |
|---|
| Symbol | |
|---|
| ID | 4478046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2750925 |
|---|
| End bp | 2754407 |
|---|
| Gene Length | 3483 bp |
|---|
| Protein Length | 1160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639726884 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_869924 |
|---|
| Protein GI | 117920732 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00423432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAA TTTCAGCCCT AACACCGCCC GTTGTCAAAA ATGGAACTCA AATGCAAACC
CTGTCGTGTC TCGCCGGGGT TGGTCAAGCT GTTACCCTCG CCAGCCTAGT TCGTCAACAC
AAGGGCACGA CATTGATTGT GACCAGTGAT ACGCCGACGG CATTGAGTAT CGAGTTAGAG
CTCAACTATT TGTTGGCTAA AAGTGTGATT AAGGTGCGAC TGTTCCCTGA CCGTGAAACT
CTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATTT CCCAGCGTTT AGAAACCCTG
TCGCAAATCA CCCAAGCCGA GCACAGCGTA GTGATTGTGC CGGTGACAAC GCTGATGATG
CGCCTACCGC CAAAATCCTA TTTAAGCTCC AATGTGTTTG TGCTTAAAAA AGGCGATAAA
TATCAGCTCC ATGATGTGCG CCAACAGTTA ACCGACACGG GTTATCACTT GGTCGAACAG
GTTTACGAAC ATGGCGAGTT TGCCATTCGT GGCTCGATTC TCGATATCTT CCCCACCGGC
GTGAATATGC CGCTGCGTAT CGAACTGTTC GATGATGAAG TCGAGACCAT TCGCCATTTC
GATCCTGAAA CCCAGCGCTC GTCCACTCCA GTCGATGCGG TGCGCCTGTT ACCCGCCAAG
GAATTCCCCA CCGACAGCAG CGCCATCGAA GGTTTTAGGC AACGTTATCG CCGACGCTTT
GAGGTCATAG TCAAAGAGCC TGAATCAGTT TATCAACTGG TGAGCCGCAA TTTGATGCCC
GCAGGTATTG AGAACTATTT GCCACTGTTT TTCGATGAGG TCGCGACACT GTTCGATTAC
CTGCCGAAGG ACACTCAATT AGTCACCCTA GGCGATATCG AAAAGTCCGC CCGCGCTCAT
TTGCAAGAGG TGGAAACCCG TTATGAGGAC AGACGGGTCG ACCCATTGCG ACCACTGTTG
GCACCCAAAG AGCTGTATTT ACTGATAGAA GAATTATTTG CCGCCTTTAA GCCACTGCCT
CGCTATCAGT TTATTGCGCC GCAACCCGAT GCCGTCGCTG GCGCAGTACA GATTGATGCC
AGTGTGTTGC CCGAAGTAAG CGCTAATCAC AAGTTAAAGC AGCCACTGAT TGCGCTGCAA
GATTACGCCG AGCGTGCGCC GCGGATGTTG TTTAGTGCCG AATCGGAAGG CCGCCGCGAA
GCTTTACTCG AACTCTTAAG TAAAATTCAG TTAAAACCGG TGTTATTCAG CCATTTCGAT
GAGTTTATTC AAAGTGATGC CAAACTGGGT TTAATTGTAT CTCCCCTCTC CCGTGGTTGT
TTACTCGGGC TAGGAAAGCA AACCGCCGTC AGCATCATCT GCGAAACCGA ACTCTTTGGT
CATCGCATTT CCCAGCAGCG CCGCCGTGAA AAACAGCGCC AGATCAGCAA CGATACTCTG
ATCAAAAACT TAGCCGAGCT CAAAGTCGGC CAGCCGATTG TGCACTTAGA GCACGGTGTG
GCGCTGTATC AAGGCCTAGT CACCTTAGAT ACCGGCGGAT TAGTGGCCGA ATACCTACAG
CTGGAATACT CGGGCGGCGA TAAACTCTAT GTGCCCGTGT CTAACCTGCA CATGATCAGC
CGCTACAGCG TCGGCGCCGA TGGCGAGGCT CACCTCAATA AACTCGGTAA CGACACTTGG
GCCAAGGCAA AGAACAAAGC GATTGAGAAA ATCCGCGATG TGGCAGCCGA GCTGCTCGAT
GTCTACGCCC GCCGTCAAGC ACGCCCCGGC GAAAGCTGCG ACATCAACGA TGAAGAGTAT
GCGCAATTTG CCCAAGGTTT CCCCTTTGAA GAAACCGTCG ATCAGGAAAG CGCAATTCAT
GCCGTGCTTG CCGATATGCA ATCCCCCGTC GCCATGGACC GCCTCGTCTG CGGTGATGTG
GGCTTTGGTA AGACTGAAGT CGCGATGCGC GCCGCCTTTG TGGCGGTGAA TGCGGGTAAA
CAAGTCGTTG TGCTAGTGCC CACCACGCTA CTCGCCCAGC AGCACTACGA AAACTTTAAG
GACAGATTTG CCGACTGGCC GGTAGTGATT GAGGTGATGT CCCGCTTTAG AACCGCCAAA
GAGCAAACCC AAGTGCTGAA ACTACTCGAA GAAGGCAAAG TCGATATAGT GATTGGCACC
CATAAGCTGC TGCAATCCGA GGCAAAGTTT GAAAACTTAG GCCTGCTAAT CATCGATGAA
GAACATCGAT TCGGCGTAAG ACAAAAAGAG AAAATCAAGG CGCTGCGCGC CAACGTAGAT
ATTTTGACCC TCACCGCCAC TCCGATCCCC CGCACCTTAA ACATGGCGAT GTCGGGGATG
CGCGACTTAT CGATTATTGC GACTCCTCCC GCTAAGCGCT TGGCGGTGAA GACCTTTGTG
CGCGAATCCG ATCCCGCCAC CGTGCGTGAG GCCATACTGC GTGAAATTCT CCGTGGTGGC
CAAGTGTATT ATTTGCACAA CAATGTCGAA ACCATTGAGA AATGCGCCCA AGATATTAGT
ACCCTGCTAC CCGAAGCGCG GGTGGTTGTG GCCCATGGCC AAATGCGTGA ACGGGATCTT
GAGCGGGTGA TGTCGGACTT TTATCACCAA AGATTCAACG TGTTAGTCTG TACCACTATT
ATCGAAACCG GTATCGACGT CCCTAGTGCG AATACGATTA TTATCGAACG TGCTGACACC
TTCGGCTTAG CCCAGTTGCA CCAACTGCGT GGCCGCGTCG GACGCTCTCA CCATCAAGCC
TATGCGTATT TGATGACGCC GCATCCTAAA CGCATGACCA GTGATGCCCG CAAACGTCTC
GAAGCCATCG ATGCCCTCGA AGATTTAGGC GCAGGCTTTA TGCTCGCGAC CCAAGACTTA
GAAATTCGCG GCGCGGGCGA GCTCTTGGGC GATGAGCAGA GCGGTCATAT TTCTAAAATT
GGCTTTAGTC TCTACATGGA AATGTTGGAG TCGGCGGTTA AGGCGCTCAA ACAGGGTAAA
GAGCCATCGC TGGCGCAAAT GCTCAATCAG CAATGCGAGA TGGAGCTAAG AATTCCTGCG
CTATTGCCGG AAGACTATGT CGGTGATGTG AATATTCGCC TGTCACTCTA TAAGCGCATC
GCCAGTTGTG ACAGTGAAGA AACCTTAGAT GAACTCAAGG TTGAGCTTAT CGACCGCTTC
GGTCTGCTGC CCGAGGCCAC CAAAAACCTG ATGGAAATGA CTTTATATAA ACATCAGGCA
ACTCGGCTGG GCGCGACTAA AATTGAGGTA CATGCTAAGG GCGGCAGCAT CGAATTTAGT
GATGATCATG TGATTGATCC GGGCTTTATC ATCGGATTAC TGCAAAGTCA GCCACAAATC
TATCGAATGG ATGGGCCGAA TAAGTTAAAG TTCATCCTCA ATGCCGAAAC GGCAAAAGAT
AGGCTCGCTT TGGTCAAACT CTTGCTCGAA CAACTATCGC AACATCGTCT TGGAGATAAA
TAG
|
|---|
| Protein sequence | MTQISALTPP VVKNGTQMQT LSCLAGVGQA VTLASLVRQH KGTTLIVTSD TPTALSIELE
LNYLLAKSVI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITQAEHSV VIVPVTTLMM
RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
VNMPLRIELF DDEVETIRHF DPETQRSSTP VDAVRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKDTQLVTL GDIEKSARAH
LQEVETRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFIAPQPD AVAGAVQIDA
SVLPEVSANH KLKQPLIALQ DYAERAPRML FSAESEGRRE ALLELLSKIQ LKPVLFSHFD
EFIQSDAKLG LIVSPLSRGC LLGLGKQTAV SIICETELFG HRISQQRRRE KQRQISNDTL
IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGLVAEYLQ LEYSGGDKLY VPVSNLHMIS
RYSVGADGEA HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCDINDEEY
AQFAQGFPFE ETVDQESAIH AVLADMQSPV AMDRLVCGDV GFGKTEVAMR AAFVAVNAGK
QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKLLE EGKVDIVIGT
HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM
RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS
TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT
FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTSDARKRL EAIDALEDLG AGFMLATQDL
EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKQGK EPSLAQMLNQ QCEMELRIPA
LLPEDYVGDV NIRLSLYKRI ASCDSEETLD ELKVELIDRF GLLPEATKNL MEMTLYKHQA
TRLGATKIEV HAKGGSIEFS DDHVIDPGFI IGLLQSQPQI YRMDGPNKLK FILNAETAKD
RLALVKLLLE QLSQHRLGDK
|
|---|
| |