| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2268 |
|---|
| Symbol | |
|---|
| ID | 4477693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2731359 |
|---|
| End bp | 2732582 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726863 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_869903 |
|---|
| Protein GI | 117920711 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACCCAC AACCGTCAAG CTATCCGACT AAACCGAGCG ACATTCCCCA TTTGGCCCTG
CTGATCCCTA TGCTCGCCGC TATTGTTGCG ATCACGCCGC TCGCGATCGA CATGTATTTG
CCCGCCATGG CAACCCTCGC CCATAGTTTC CATACAGATA TCACCCTAGT GCAACAATCC
TTAAGTGTTT ACTTGGGCGG CTACGCCTTG GGTATGCTGT GCTTTGGCCC ACTTGCAGAC
CGTATTGGTC GTCGCCCCAT GGTAATAATG GGTCTCTCGG GCTTTATGGT AGTCAGCCTG
TTATTGGGCT TAGCCGAGCA GATTGAAGTG TTTTTAGGAC TGCGCTTTTT ACAAGCCTTT
ATCGGCGCTG CGGCCACTGT GGTCGTCCCT GGGTATATCA AAGAAGTCTA TGGTGAAAAC
ACGGCTAAGG GTATGTCTTA TGTCAGTTTA ATCATGATGT TAGCACCATT ATTAGCACCC
AGCATCGGTA GCCTTATCCT CGAGCTTGGC AAATGGCATT TGATCTTCTT TATCCAATCG
GCCTATGCCA TGTTGTTGCT GTTGTTGGTC ATTACGTTGC TCAGAATGCC GAGCGATAAA
GATCAGAGTA GCCGCAGTCA AAAATCCTTT TTAGGGGCTT ATGCTACTGT GTTTTCACGT
CCCGGCGTCA AAATGAACAT TGCCAGTGGC GTGCTTACCT CTTTTGCGTT TTTTTGTTAT
TTAACCGCGT CGCCCTTTGT CTATATGGAG GTTTTTTCCC TAGATAAATC CTTATTCGCC
CTGCTCTTTA GTACCAATGT GGGCGCACTG ATGCTGGCAA ATATTATCAA TACCCGAATT
GTGGGCCGTT ATGGTTCGTT GAGGATGCTG CACGTGTCGA CCTTTTTCGG TGCGCTGGCG
GCGGTAGGTT TACTGGGAGT GAACTTACTG GGGCTCAGTT ATCATTTCAC CGTATTGATG
TTGATCCCGC TGATGGGGAG CCTTGGTATC ATGTCGGTCA ACGCCGATGC TATTGTGCTG
ATGAAATTCA AGCAGGAAAC GGGCACTGCA ACGGCAGTGA TTGGCACCCT AAGATTCGGT
TTTGGCGCCC TTGCTGGGCC ATTACTCGCG CTGTTTTACA ATGGCACCGC AGTGCCCTTC
TCGGCATTAA TGCTGACGGC GGTATTGTTG GTGGGATTCT GTCAATTTAA CCGACCGACT
CACCAAGCCA AGCCGAAGGA GTAA
|
|---|
| Protein sequence | MDPQPSSYPT KPSDIPHLAL LIPMLAAIVA ITPLAIDMYL PAMATLAHSF HTDITLVQQS
LSVYLGGYAL GMLCFGPLAD RIGRRPMVIM GLSGFMVVSL LLGLAEQIEV FLGLRFLQAF
IGAAATVVVP GYIKEVYGEN TAKGMSYVSL IMMLAPLLAP SIGSLILELG KWHLIFFIQS
AYAMLLLLLV ITLLRMPSDK DQSSRSQKSF LGAYATVFSR PGVKMNIASG VLTSFAFFCY
LTASPFVYME VFSLDKSLFA LLFSTNVGAL MLANIINTRI VGRYGSLRML HVSTFFGALA
AVGLLGVNLL GLSYHFTVLM LIPLMGSLGI MSVNADAIVL MKFKQETGTA TAVIGTLRFG
FGALAGPLLA LFYNGTAVPF SALMLTAVLL VGFCQFNRPT HQAKPKE
|
|---|
| |