Gene Shewana3_2224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2224 
Symbol 
ID4478620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2673518 
End bp2675098 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content50% 
IMG OID639726819 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_869859 
Protein GI117920667 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.264069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.72348 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCAGC AAGTGATGGC AGGGCAAGAC CATGCCCAAG CTGAGGCCGT TAACGCGAGC 
GGTGCTTTGC AAACCGATAC CAAAAAGCAC GAGCAACATC TTGGGTTTAT CACGCTTTCG
GTGATGCTAG CGACCATTAT GCAGGCGCTG GATACAACGA TTGCCAACGT GGCCTTGCCC
CATATGCAGG GCAGCATGGG GGCGACTCAG GATCAGATCT CTTGGGTGTT AACCTCCTAT
ATTGTGGCCG CGGCGATTTT TATGCCGCTG ACGGGTTTTT TAACCGCCAG GATTGGGCGT
AAACGGGTAT TTATGTGGGC AGTGGTGGGC TTTACGATTG CCTCTATGCT GTGCGGTGCG
GCGCAAAACC TTGAGCAAAT TGTGTTATTT CGCTTATTGC AAGGGGTGTT TGGTGCCAGT
TTAGTGCCTT TATCCCAATC GGTATTACTC GACAGTTACC CGCCAGAGCG CCATGGTTCG
GCCATGGCCC TTTGGGGTGT TGGTGTGATG GTCGGGCCGA TTTTGGGACC ATCCCTCGGT
GGTTGGTTAA CTGAGTATTA CAACTGGCGC TGGGTGTTCT ATATCAACCT GCCTTTTGGG
CTATTGGCTT GGTTTGGTCT TGCCGCCTAT GTGAAAGAAA CGCCGCTGGA CCATAGCCGC
AAGTTCGATT TACTCGGTTT TGCCATGTTG AGTCTGGCCA TTGGCGCCCT GCAAATGTTG
CTCGATAGGG GAGAATCCCT CGATTGGTTT TCCAGTCGTG AAATCGTTAT CGAAGCCATA
ATTGCTGGCA TGGCGTTTTA TCTGTTTATT GCCCATATCT TTACCCATAA ACATCCCTTT
ATTGAGCCTG GGCTGTTTAA GGACAGAAAC TTCAGTGTCG GGCTTATCTT CATTTTTATC
ATCGGGATTA TTCTGCTGGC GACCATGGCC TTATTGCCGC CTTTTATGCA GACCCTGTTA
GGTTATCCTG TGATTGATGT GGGTTACTTG CTGGCGCCAA GGGGCGTCGG CACTATGATC
GCCATGATGA CTGTGGGTAA GCTCGCCGGC AAAGTGGATG TACGTTACCA AATCTTTTTA
GGTTTGATGC TCACCATTTT GTCCCTATGG GAGATGACGG GCTTTAACAC CAATATTACC
GGCTGGGATA TAGTGCGAAC TGGGGTTATC CAAGGCCTTG GCTTGGGCTT TATCTTTGTG
CCACTCTCGA CCATTACCTT TGCAACCTTA GCGGCAAAAT ACCGTAATGA GGGGACTGCG
CTCTTTAGTC TGATGCGAAA TATCGGCAGC AGTATAGGGA TCTCCGTGGT GATCACCTAT
CTTGCCCAGC ACACACAGAT GAATCATGCG GCGTTTGCCG ATTACATTCA TCCCTTTAGT
TTTGCGCTCA AGCACGCCGT TGATCTTCAT GCCGTTGATT TATCGACGAC ACAGGGCATA
GCCTTACTCA ATGCCGAAGT GAATCGTCAG GCGGCGACCT TGGCCTATTT GCAGGACTTT
AGGTTAATGA TGTGGGTGAC GTTATCCGCC GTGCCCTTAG TGTTTCTGCT TAAAGGCGTG
CATAAAAAAC CAAAGCCATA G
 
Protein sequence
MSQQVMAGQD HAQAEAVNAS GALQTDTKKH EQHLGFITLS VMLATIMQAL DTTIANVALP 
HMQGSMGATQ DQISWVLTSY IVAAAIFMPL TGFLTARIGR KRVFMWAVVG FTIASMLCGA
AQNLEQIVLF RLLQGVFGAS LVPLSQSVLL DSYPPERHGS AMALWGVGVM VGPILGPSLG
GWLTEYYNWR WVFYINLPFG LLAWFGLAAY VKETPLDHSR KFDLLGFAML SLAIGALQML
LDRGESLDWF SSREIVIEAI IAGMAFYLFI AHIFTHKHPF IEPGLFKDRN FSVGLIFIFI
IGIILLATMA LLPPFMQTLL GYPVIDVGYL LAPRGVGTMI AMMTVGKLAG KVDVRYQIFL
GLMLTILSLW EMTGFNTNIT GWDIVRTGVI QGLGLGFIFV PLSTITFATL AAKYRNEGTA
LFSLMRNIGS SIGISVVITY LAQHTQMNHA AFADYIHPFS FALKHAVDLH AVDLSTTQGI
ALLNAEVNRQ AATLAYLQDF RLMMWVTLSA VPLVFLLKGV HKKPKP