| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2171 |
|---|
| Symbol | rnfD |
|---|
| ID | 4478375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2604281 |
|---|
| End bp | 2605330 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639726767 |
|---|
| Product | electron transport complex protein RnfD |
|---|
| Protein accession | YP_869807 |
|---|
| Protein GI | 117920615 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
|---|
| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0839879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTTACCCGTA ATTTGCATAC TTCAACGGTT
ATGCAAAGGG TTATTTTATG CTTGTTACCC GGCCTTGTGG TGCAATGCGC CTTTTTCGGC
TGGGGTACGC TTATTCAAGT GTTACTGGCA ATTATCGTAG CCTTAAGCTG TGAAGCCGCG
GTGATGAAAC TGCGTAACCG CAGCATCAAA GCGAGTTTAA GCGATAACAG CGCCATGCTG
ACGGCAATCT TAATCGGGGT TGCGATCCCG CCGCTGGCAC CTTGGTGGAT GATCGTTATG
GGCACAGTGT TTGCGATTGT TATCGTCAAA CACCTCTACG GCGGCCTAGG CCATAACCTG
TTCAACCCCG CAATGGCCGC CTATGTGTTA CTGCTGGTTT CATTCCCTGT ACAGATGACC
AGTTGGATAG CACCAAGTAC CGTTGCGCTC AATACCCCAA GTGTGATCGA TAGTTTGCAA
TTGATCTTCA ATGTCGGCGC CCATGGTGGC ATGGAACAAT TCCGCCTCGG TATCGATGGG
ATCAGTATGG CGACACCACT CGATACCCTC AAAACCGATC TGTCCTTAGG GCTCACCACC
ACTGAAAGTA TGGCTAAAAG CATCTTCGAT GGCGGCACTG GCGTTGGTTG GTTTTGGGTC
AATTTGGCTT ATCTTGCTGG CGGTTTAGTG CTACTCAAAT TAAAAGCCAT CCGTTGGCAT
ATCAGCACCG GCGTATTGGC GGGATTATTT GTGGCATCGA GCATTGGCTT TTTACTGTCG
CCCGATACTC AGGCAAGCCC ACTGTTCCAT TTATTCTCGG GCGCGACCAT GCTCGCCGCC
TTCTTTATTG CGACCGATCC TGTCACCGCG GCGACCAGTC CGCGCGGCCG TTTGATTTTC
GGCGCATTAA TTGGCGTCTT GGTCTATATC ATTCGTACCC AAGGTGGCTA CCCCGATGCC
TTCGCCTTTG CCGTACTGCT CGCAAACCTG TGCGCGCCAT TTATTGACTA CTATGTGCGT
CCGCGCACCT ATGGCCATTC AGCGCCCTAG
|
|---|
| Protein sequence | MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLIQVLLA IIVALSCEAA
VMKLRNRSIK ASLSDNSAML TAILIGVAIP PLAPWWMIVM GTVFAIVIVK HLYGGLGHNL
FNPAMAAYVL LLVSFPVQMT SWIAPSTVAL NTPSVIDSLQ LIFNVGAHGG MEQFRLGIDG
ISMATPLDTL KTDLSLGLTT TESMAKSIFD GGTGVGWFWV NLAYLAGGLV LLKLKAIRWH
ISTGVLAGLF VASSIGFLLS PDTQASPLFH LFSGATMLAA FFIATDPVTA ATSPRGRLIF
GALIGVLVYI IRTQGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSAP
|
|---|
| |