| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2160 |
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| Symbol | |
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| ID | 4478356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 2587987 |
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| End bp | 2590170 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639726748 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_869796 |
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| Protein GI | 117920604 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.472781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCGAC GTCAGCATCA GCATTTATTA GAGTCTTTAG TGCATTCCAC GGCTAAACAG
CAGGGTGATT TTACTAAGAC CGCAGAGTTA GCCACTGAGC TACTTTGCCA AAATTTAGCC
GTTTCTCTGG TGTCGGTTTG GATTTTTTCC GCCGACCAAT CGAGCCAATC CCTAGTGGCG
CAATTTGGCG CTATGCCCCT ACAAGACACT TACCGCCCCT CGCAGTTGCA GACGCTGCCT
TGTTATTTAA ATGAACTCAA AAATCATCGC CATATCGATG CGGGTAATAC CCTTATCGAT
CCACGCTTGA CTGAGTTAGT CGATAACTAC TTTATCCCTC GGCAAATTTT ATCTAGTCTC
GAGATTGGCA TTCGCATTAA TGGTCATCTC GAAGGCGTGC TTTGCCTAGA GCGAGCGCAA
GTTACTCACC ATTGGCACGA TAGCGAAATC CATCTTGCCT GCCAAATGGC CGATCAACTG
GCCCTCACGC TGGCCACTAA ACATACCTAT GATAAAGAAG AGCGCCTAAG CCTATTTCGC
TGTGCCACCG AGCAGTCACG CCAGATGAGC ATGCTGATTA ACCTGCACAC TGAAAAAGTC
GAGTACGTGA ACCAAGCCCA TGAAGAGATC ACCGGCTTAG CGCGTGAAAA AAGTATTGGC
GCCAATTTAC GTGAGCTAAG TTTTTTTAAG CAGCACAATC AATTAGCTGA GCAAACTCTC
GCGCAGATCT TCAGGGGTGA GCAGGCCAAG GGCGAGGTAC AATTTAATCG AGCAGATGGT
AGTCGCTACT GGCTCAAATA TGTAGTCAGT CAATTTATCA CCGATCGCGG CAATCATTAC
GCCTTAGTGT CGGGCGAGGA AAGCACGGAT GAGCACAATT ATAAGGCGGA GCTTGAGCGT
CTAGCCTGGC GTTGTAGCCT CACTGGGCTG AATAATCGCA GTCACTTCAA TCGCGTATTG
GAGCGCACTA CCAATGGATT GTTGCTGTTG GTCGATTTAG TCGCCTTTAA ACGTTTCAAC
GATACCTATG GCCACGAAAA TGGCGACAGC TTGCTGATCG AAATTGGCCG GCGCTTAAAA
CATTTTTCGG AAATCAATAA GGCAACCGAA ATTGCCCGCG TCGGTAGCGA CGAGTTTGCC
GTGTTGCTCA CCGATGATAA CGCGGTTTAC GATCTGGATT ATTTCAGTAC CCGCCTATAT
CAGCATTTAG CCATGCCGAT TTTAATCGGT CGTGAGCAAA TCGAACCTAA ACCCGCACTG
GCGGTTGTCG ATATCGCCTC GGTGGCCAAT CTGTTCGCAC CGCTGACCTG CGCCGATATT
GCGGTGCAAT ACGCAAAGAA GAAAAAGGGT ACAGCTATTC AAGTGTTTAA CAGCACCTTG
CTCAGTGCCT TTAAGGAAGA TGCGCAAATC GAGCGTGATT TACATAGCGC GATTCGCGGT
CGTCAATTCG AACTTTATTA TCAGCCCTTA CGGGATCTGG AGCAGAAAAC CTATATCGGT
GCCGAAGCCC TGATCCGTTG GCATCACCCG AAAAAAGGTG TGCTGTATCC CGGCGCCTTT
ATCGATATTG CCGAGCAATC TGGGATGATA AATGCCATTG GCAGTTGGGT GCTGGAGGCC
GCGTGCCGAC AATTGAATAT ATGGCAGCAC CATAATGCCG ATTTAAGCAT GCATGTTAAC
GTGTCGGCGC GGCAGTTTTT TAGCGGAAAC CTGTATGAGC AAGTCTGGCA ACTGCTGACG
CGCTATCGTT TAAAGCCTAA AACCCTGATC CTTGAGATCA CCGAGACGGA ATTGATGGGC
GACATTCGCC ATGCCACGCT CTTATGTCAG GAATTGGCAG AGCTGGGTGT GGGGCTGGCC
ATAGATGACT TTGGCACCGG TTACAGCTCG ATGCGCTATC TTAAACAATT CCCGATCAGT
AAGTTAAAAA TCGACCGCTC CTTTATCTCC GATCTCGCCA TTAGCCGCGA AAGCCAAGAA
ATCGTCTCGG CCATTATTGC GATGGCGAGC GCGCTTAATA TTTCCTTGAC CGCCGAAGGG
GTTGAAACCG CCGAGCAGGA AGCGTTTTTA GCCAAGAGTT TTTGCCATCA GGCGCAGGGG
TATTTATACA GTCCTGCGTT GCGAGAGCCC GAATTTGCGC AATTCTCATT GGTGGCAAAA
GAACCTAATC TTGTTACGCA TTAA
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| Protein sequence | MKRRQHQHLL ESLVHSTAKQ QGDFTKTAEL ATELLCQNLA VSLVSVWIFS ADQSSQSLVA
QFGAMPLQDT YRPSQLQTLP CYLNELKNHR HIDAGNTLID PRLTELVDNY FIPRQILSSL
EIGIRINGHL EGVLCLERAQ VTHHWHDSEI HLACQMADQL ALTLATKHTY DKEERLSLFR
CATEQSRQMS MLINLHTEKV EYVNQAHEEI TGLAREKSIG ANLRELSFFK QHNQLAEQTL
AQIFRGEQAK GEVQFNRADG SRYWLKYVVS QFITDRGNHY ALVSGEESTD EHNYKAELER
LAWRCSLTGL NNRSHFNRVL ERTTNGLLLL VDLVAFKRFN DTYGHENGDS LLIEIGRRLK
HFSEINKATE IARVGSDEFA VLLTDDNAVY DLDYFSTRLY QHLAMPILIG REQIEPKPAL
AVVDIASVAN LFAPLTCADI AVQYAKKKKG TAIQVFNSTL LSAFKEDAQI ERDLHSAIRG
RQFELYYQPL RDLEQKTYIG AEALIRWHHP KKGVLYPGAF IDIAEQSGMI NAIGSWVLEA
ACRQLNIWQH HNADLSMHVN VSARQFFSGN LYEQVWQLLT RYRLKPKTLI LEITETELMG
DIRHATLLCQ ELAELGVGLA IDDFGTGYSS MRYLKQFPIS KLKIDRSFIS DLAISRESQE
IVSAIIAMAS ALNISLTAEG VETAEQEAFL AKSFCHQAQG YLYSPALREP EFAQFSLVAK
EPNLVTH
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