| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2146 |
|---|
| Symbol | |
|---|
| ID | 4478342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2571265 |
|---|
| End bp | 2571852 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639726734 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_869782 |
|---|
| Protein GI | 117920590 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1896] Predicted hydrolases of HD superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000137554 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0196393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATT TATTTGCCCA CCTCGCCCGA ATGAAACTTA TCCAGCGCTG GCCATTAATG
TACAACGTGC GCACCGAAAA CGTTCAAGAG CATTCGCTGC AAGTTGCCAT GGTCGCCCAT
GCCCTCGTGA TTATCAGTAA TAAGAAATTT GGCACCACGC TCGATGCCCA TCAGGCGACC
AGTTTAGCGA TTTTCCATGA TGCCAGTGAG ATTTTAACTG GCGACTTACC GACTCCGGTA
AAGTACTTTA ATAAAGAAAT CGAAGCCGAG TATAAGAAGA TTGAGGCCAT TGCCGAGCAG
CGCATGCTCG ATATGGTACC CGATGAATTT AAAGAGGATT ATCGCAGCCT GTTTATTAGC
GATTACGCCG ATCCGATTTA CAAAGCCATA GTCAAATCCG CCGATACCCT GTGCGCTTAC
CTTAAATGTC TAGAGGAAAA CCGCGCTGGC AACACCGAAT TTAATACCGC GCGTAAACGA
CTCGAAGCCA TGCTGGCGGC CAATTCCGAT CCGGCGGTGA AATATTTTAT GGATTGCTTT
GTGCCAAGTT TCACCTTGAA TTTAGACGAA ATTAACAAGA TGTTGTGA
|
|---|
| Protein sequence | MSHLFAHLAR MKLIQRWPLM YNVRTENVQE HSLQVAMVAH ALVIISNKKF GTTLDAHQAT
SLAIFHDASE ILTGDLPTPV KYFNKEIEAE YKKIEAIAEQ RMLDMVPDEF KEDYRSLFIS
DYADPIYKAI VKSADTLCAY LKCLEENRAG NTEFNTARKR LEAMLAANSD PAVKYFMDCF
VPSFTLNLDE INKML
|
|---|
| |