| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2089 |
|---|
| Symbol | |
|---|
| ID | 4479497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2506781 |
|---|
| End bp | 2509798 |
|---|
| Gene Length | 3018 bp |
|---|
| Protein Length | 1005 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726674 |
|---|
| Product | formate dehydrogenase alpha subunit |
|---|
| Protein accession | YP_869725 |
|---|
| Protein GI | 117920533 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000081067 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGAC GACAGTTTTT TAAACTCTGT GCTGTAGGAG CCGCGACTTC TACTATTTCT
GCACTGGGGT TAATGTCCGA AAAGGCATTT GCATCCGTCA GAGGTTTTAA ATTGCTACGC
GCAAAAGAGA CGCGTAACAA TTGTTGCTAC TGCTCTGTGG GTTGTGGTTT GTTGATGTAC
AGCCAAAGCA GTAATGGGAA AAATGCGGAG CAGAGCATTT TTCATATCGA GGGCGATGCC
GATAATCCGA TTAACCGCGG CGCCCTGTGT CCAAAAGGGG CAGGACTGGT TGACTATGTG
AACAGTCCGC ACCGTTTAAA ATACCCCGAA GTGCGTTTAC CCGGTTCGGA TAAATGGCAG
CGCATTAGCT GGGATGAGGC CTTTAAGCGT ATCGCAAGGC TTATCAAAGA CGAGCGCGAT
GCCAATCTGG TTGAGAAAAA TGCTCAGGGT CAAACCGTTA ACCGCTTAGT CAGCCTAGGG
ATGATGACGT CATCGGCCCA GGCAAACGAA GGCTGCTACA TTACCCATAA ATTTGGCCGT
GCCATTGGTA TGTTAGGCAT AGATAACATC GCCCGTGTTT GCCACGCCCC AACACCGGCC
GCGATGGCGC CCACCTTTGG CCGTGGTGCT ATGACTAACC ACTGGGCGGA TATGAAAAAT
ACCGATCTGG CCATTGTGAT GGGCGGTAAC GCTGCCGAAG CGCATCCCGT CGGCTTTGGT
TGGGTGACAG AAGCGATGGA GCACAACAAC GCCAAGTTGA TTGTGGTCGA TCCGCGCTTT
AACCGAAGTG CTGCCGTCGC CGATTTATAT GCGCCTATTC GTTCGGGCAC CGATATTGCC
TTCCTGCTCG GCATGATCCG CTACCTGCTC GAAACCCAGC AAATCAACCT TAATTATGTC
AAAGCCTATA CCAACGCCAC GTTTATCGTG CGGGAAGACT TTGAATTTAA TGACGGTTTA
TTCAGTGGCT ACGATGAGGC TAACCATAAA TACGACCAAT CCACTTGGTT CTACGAGCTA
GATGAAGAGG GTTACGCAAA AGTTGACCCT AGCTTAAGCC ATCCTCGCTG CGTGATTAAC
CTGCTGAAAA AACACGTCGA TCGCTACGAT CCCTACACGG TTTCTAGCAT CACAGGTACG
CCTAAAGAAG CCTATCTTGA AGTGTGTCAG CAAATTGGGG CGACCCATGT TGACCATAAA
GCTGCCACCT TCCTGTATGC CCTCGGTTGG ACACAGCACA GCGTTGGCGC GCAAAACATC
CGTACCATGG CGATGATCCA ATTGCTGCTT GGCAATATGG GAATCATGGG CGGCGGCGTG
AATGCGCTGC GCGGTCACTC AAACGTACAG GGCGCGACGG ACTTAGGTTT ATTGTGCCAA
GGATTACCTG GCTACCTTAA ACTGCCACAG GATAGAGATG TTGATTTACA AAACTATTTA
GCCCATTACA CCCCTAAAGC CTTAAGACCA AACCAAACCA ACTATTGGCA CAATTACCCA
GCCTTTACCG TGTCGTTGTT AAAAGCCTTC TTCGGTGAAC ATGCAACGGC AGAGAATGAT
TATGGTTATA ACTGGCTGCC AAAATGGGAC CAACAGTACG ATATCAACAA GCAAATCGAC
ATGATGGTTC ACGGTGAGGT CAACGGATAC TTTATCCAGG GCATCAACGC GCTTAACTCC
CAGCCCGATA AGCAAAAAGT GTCTAAGGGC TTATCGAATC TTAAGTTCTT AGTAGTGCTC
GATGCGCTTG CGAACGAAAC CTCGAGTTTC TGGCGCAATG CGGGTCAATT TAACGATGTC
GATACCGCCA GTATTCAAAC CGAAGTCTTC CGCTTACCAA CAACCTGTTT TGCTGAGGAA
AGTGGTTCCA TTGCTAACTC GAGCCGCTGG TTACAATGGC ACTTTAAGGG CGCTAATCCT
CCCGGTGAAG CCTTATCTGA TCCTGCGATC CTTTCTGGCA TCATGCTGGA ATTAAAACGT
TTATACCGTG AAGAGGGCGG CCGTTTACCT GCGCCTATCG AAGCCATTAA ATGGGACTAT
GCGATTGAGC ATGAACCCAG TTCAGAGGAA ATCGCGCGGG AGATGAACGG TTATGATCTC
ACGACCGGTA AGCTGCTCAA TGGTTTCTCC GAATTAAAAT CCGATGGCTC AACCTCATGC
GGTATTTGGG TTTACTCAGG CATGTGGACT GAAGCGGGCA ACTTGATGGC GCGCCGCGAT
AATAGCGATC CATCCGGCAA AGGTATTACC CCGAATTGGT CATTTGCATG GCCTGCAAAC
CGCCGCATCT TGTACAACCG CGCATCCTGC GACGTGCAAG GTAAGCCGCG CGATCCAAGC
CGTGTGCTAC TCGAGTATAA GGACAACAAG TGGCAGGGTA TTGATGTGCC AGACTTTAAT
GCCAAATTGA ATGCCGAAGA ATCGGCCCAT CCTTTCATCA TGCAAGCTGA TGGCGTTGGC
CACTTATTTG CGCTGCGTGA CTTAAAAGAT GGCCCATTCC CAGAGCATTA CGAGCCGTTT
GAATCACCAC TGGCGAGTAA CCCGCTGCAT CCTAAGGTCA CCAATAACCC TGTGGCACGG
ATGTTCAAAG GCTTACGTGA AAGCTTTGGT ACCAATGAAG AATTCCCCTA TGTTGGCACC
ACTTACTCAA TGACGGAACA CTTCAACAAC TGGACCACGC ATTGCCACCT TGCTGCGATT
ACCCAGCCAC AGCACTTTAT CGAAATCGAT GAAACCTTGG CGGCGGAAAA GGGCATCAAT
AACGGTGATT GGGTCAAGGT GAGCTCTAAG CGCTCGCATA TTGTCACTAA GGCCTATGTC
ACTAAACGAC TCCAACCCAT GATGGTTCAG GGCAAAAAAG TTCACACCAT TGGTATTCCA
CGCCATGGCA GTTATGAGGC CTTGACGCAG AAGAGTTATA TCGTCAACGA GCTGACTTCA
TCTGTGGGCG ATGCCAATAC CCAAACCCCT GAATATAAAG CATTCCTTGT GAATATTGCC
AAAGCGGAGG GCTTCTAA
|
|---|
| Protein sequence | MNRRQFFKLC AVGAATSTIS ALGLMSEKAF ASVRGFKLLR AKETRNNCCY CSVGCGLLMY
SQSSNGKNAE QSIFHIEGDA DNPINRGALC PKGAGLVDYV NSPHRLKYPE VRLPGSDKWQ
RISWDEAFKR IARLIKDERD ANLVEKNAQG QTVNRLVSLG MMTSSAQANE GCYITHKFGR
AIGMLGIDNI ARVCHAPTPA AMAPTFGRGA MTNHWADMKN TDLAIVMGGN AAEAHPVGFG
WVTEAMEHNN AKLIVVDPRF NRSAAVADLY APIRSGTDIA FLLGMIRYLL ETQQINLNYV
KAYTNATFIV REDFEFNDGL FSGYDEANHK YDQSTWFYEL DEEGYAKVDP SLSHPRCVIN
LLKKHVDRYD PYTVSSITGT PKEAYLEVCQ QIGATHVDHK AATFLYALGW TQHSVGAQNI
RTMAMIQLLL GNMGIMGGGV NALRGHSNVQ GATDLGLLCQ GLPGYLKLPQ DRDVDLQNYL
AHYTPKALRP NQTNYWHNYP AFTVSLLKAF FGEHATAEND YGYNWLPKWD QQYDINKQID
MMVHGEVNGY FIQGINALNS QPDKQKVSKG LSNLKFLVVL DALANETSSF WRNAGQFNDV
DTASIQTEVF RLPTTCFAEE SGSIANSSRW LQWHFKGANP PGEALSDPAI LSGIMLELKR
LYREEGGRLP APIEAIKWDY AIEHEPSSEE IAREMNGYDL TTGKLLNGFS ELKSDGSTSC
GIWVYSGMWT EAGNLMARRD NSDPSGKGIT PNWSFAWPAN RRILYNRASC DVQGKPRDPS
RVLLEYKDNK WQGIDVPDFN AKLNAEESAH PFIMQADGVG HLFALRDLKD GPFPEHYEPF
ESPLASNPLH PKVTNNPVAR MFKGLRESFG TNEEFPYVGT TYSMTEHFNN WTTHCHLAAI
TQPQHFIEID ETLAAEKGIN NGDWVKVSSK RSHIVTKAYV TKRLQPMMVQ GKKVHTIGIP
RHGSYEALTQ KSYIVNELTS SVGDANTQTP EYKAFLVNIA KAEGF
|
|---|
| |