Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2086 |
Symbol | |
ID | 4476332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2500940 |
End bp | 2504305 |
Gene Length | 3366 bp |
Protein Length | 1121 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639726671 |
Product | beta-xylosidase-like protein |
Protein accession | YP_869722 |
Protein GI | 117920530 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00280414 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000469917 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGTGCTTA AACGCTCATT CGTGTCAGCA AGCTTGATCA TGGCACTAGC CTCCTGTGGT GGGGACGACA GCAGCTATAG TGCAGACGAC ACAAATACCT TTACACTTCC TCCCCCTATG ACATCGGCGG ATCCGATAAT TGCAGGTGAG GTGAGCTACA AAAATGCAGT GGTTCATGAT CCTTCCATCA TTAAAGATAC CGATGGCACC TATTATGTTT TCGGCTCCCA CCTCGCGGTG GCCAGTTCTA CTGATTTAAT GAACTGGACA CAAATTGCCT CAGATGGTGC AGCCGAGAGC AGCCTGTTCA ATACCTATGA GTCAGAAATC GCGGAAGGCA CCGCATGGAC GGGTGGCTTT GTTGGCTCGT GGGCACCGGA TGTGATAAAG CTTGCCGACG GTAAGTACCA TTTCTATTAC GACTTCTGTG GCGGCCCCGA TAAGATTGAT TGCGTATCGC GCTCCTATCT GGGGATGGCC ACCTCTGACA ATATTTTAGG CCCTTATGTT AACCAAGGCT TGATCCTGAA ATCAGGTCAA GAGGGGGCTG AAAACCCTGG CGCAAACGGT CAAATTTACG ATGGCTTTGT CGACCCTAAC GCTATCGATC CCGCCGTGTT TTACGATAAA GATGGCGGTC TATGGATGAC CTATGGTTCC TATTCCGGCG GGATCTGGGT GATGCAGTTA GACCCTGCAA CGGGTAAACC GTTACCTGAT CAGGGCTATG GCACTAAGAT CATGGGTGGT AACTACAGTG CCATCGAAGG GTCTTATGTT ATATACAGCC CTGAATCTGA ATACTATTAT ATGTTTACCT CTTTTGGCGG CTTCGCCCAA AAAGACGGTT ACAACATTCG TATCTCTCGC GCTAAAAATC CTAACGGTCC CTATGTGGAT GCCGCGGGTC TGGACATGAT TGGCGCAACG GCCGCAGGCA ATATCGCCGA CTATGGCGTC AAACTGATGG GCGGCTTCCA ATTTGTGGCC CACCCGGGCG ATGTGGGCCA TGATCATGGT TACCTGTCAC CCGGCCACAA CTCCGCTTTT TATGATGCAC AAACGGGCAA ATACTTCTTA GTATTCCATA CGCGCTTCCC CGATACCGGC GAAGGTCACA GCGTGCGCGT ACATGAGCTA TTTCTCAACA GCGATGGTTG GTTAGTTGCC TCACCACAGC GTTATGCACC GATCAACGGC GCTAACATTG TCGATGAAAT CGATGTCACC GGTGATTATC AATTTATTAA TCACGCAAAA AATATTAATA CCGCGGCACA CAAATCAGTC CATGTGAAGT TATCCCGTAC TTGGACCAAT AAAGGTACAG TCTCTGGCGA TGTAACAGGT ACTTACCAAC AGGGCGATGA TAACCAAATC ACCTTAATGT TAGACAATTT AGGCACGTTT GAAGGCGTAC TCGCTTGGCA GTGGGACCCT GAGCAAAATA AACTTATGCC GACGTTTAGC GCCATTTCTA ATGATGGGGC GAGTATTTGG GGCGTGAAGC TCACCGATAA AACCACTGAG GAAATTTTAT CGGCATCGGC AAACGGCATT AGCCTGCCGA CCGAAGCTAC CGAAGGCACG ATCGACTTAC CGACAAATGG TACCCGTGGG GCGACTATCG AGTGGCAATC GAGCGATGAG TCAGTGATCC GTGCCGATGG CACCATTATC CGACCCAACG TTGGCGAGGG CGATAAGGTC GTGACCTTGA CCGCGACAAT TATGGTCAAT GGTAAGAAGG TGACTAAAAC CTTCCAAATT ACCGTATTTG CCCATAAAAC CTATAACCGT ATTGCCCACT ACAGCTTCGA GAATAACCTC AAGGATTCCC TAGGCTTATT TAGTGATGGT CAACCCACTG GCGATAGGAT CTTCAAAGCG GGTGATGCCA TTGGTTACGC CACAGGCTTT GAAGGACAAG CCCTATCATT AGATGGTGCC CACGGGGTGT TACTGCCATC GGGCATTATC TCCAGCTACG AGTACACAGT GTCTTTCTGG GCAAGTCCTG CGGTTATCAC AGGATTTACC ACGGCATTCT TCGGCGCAGT TAACGAGCAA ACCGCTGAAG ATGGTAGCAA GTTCTCCAAT ACCTGGGTCA GCTTGCTGCC ACAGGGCTGG GACGGTAATA CCATGTTCTG GAGCCATAAT ATCGATACCA GTGGCAGCTC AGTACTGGAG ACCTGGTTTG ATGGTGTAAT GGGTGAGCGC ATCGCTGAAA ACACTTGGTC GCATCTGGCG TTCTCCGTCA ATAAAGGGCT CGTTAAAGTC TTTATCAACG GGGTTGAGCG CTTTAGCAGC GGTAACCTTG CCAACTACTT TACGGGGGCT CAGGGCGTTT TCGGTCTTGG GGTTAACTAC TGGGATGTTC CATACAACGG CCTTATCGAT GAGCTAAAAG TATATGAAGC GGCATTAACG GCTGAAGAAG TCAAAGCCCT CGATATCGAC AAGTTAGCCG ATAGTGAACT CTTGTCCTCA GCAACGGCCA TTCTGGAGCT AGGCGACTTA TCGGCGGTGC GTGAAAATAT CGAACTGCCA GTAACGGGTC CTTATGCTTC GGCCATTTCA TGGGAATCGT CAGATCCAAC GACTATTGAT ACTCATGGTG GCGTAACGCA ACCTGTTCGT GGTGAAGAAG ACAAGGTTGT CACCTTAACG GCGACCTTAA AACTGGGTAA TGCGACCCAA ACCAAAGTCT TCACGGCAAC CGTTAAAGCT AAGAATCCGC CAACACCGGT CGCAATCTAT AGTTTTGAAG ACAATCTTAA CGACAGTACC GCTAACTTCG GTGCGGGCAC TGTAGTGGGT AACCTGATTG GCGTTGAAGG CGGTAAAATC AGCTATGTGG ATGGCGCGGT AGGCAAGGCG GCGGTCTTTG ATGGTGCCTC TGGTATTGTA TTGCCGAATA ACCTTATCAA AGACTACACC TATTCAGTGT CAATGTGGCT CAACCCTGAG CAGCTGAATA AGTACACTAC AGCCTTGTTT GGTTATGCGA CGGATTCCAG CTGGACCAGC GTCTTACCAG GCGGTCAAAA TGATTATGAG CGCATGGTGT TATGGTCAGG CACAGCATGG TACGACGGTA GAACTGGTTT TGTGATGCCA AAATCCCAAT GGACGCACCT TGCGTACACA GTGAATGGCG GCGAGGTGAA GGTCTATATC AATGGTGAAT TGAAGTTTAC CGGCGCGAAC TTCCCGAACA TATTCTCAGT ACCGACCACT AAGTTTGCGG TTGGGGTCAA CTTCTGGGAT GCACCTTTTA AAGGGGCAAT CGATGAAATC AAGTTCTATG ACGAAGCGAT TACTGAGCAA GATGTAGCTG ATTTATTTGG TGAATCTAAT CAATAA
|
Protein sequence | MVLKRSFVSA SLIMALASCG GDDSSYSADD TNTFTLPPPM TSADPIIAGE VSYKNAVVHD PSIIKDTDGT YYVFGSHLAV ASSTDLMNWT QIASDGAAES SLFNTYESEI AEGTAWTGGF VGSWAPDVIK LADGKYHFYY DFCGGPDKID CVSRSYLGMA TSDNILGPYV NQGLILKSGQ EGAENPGANG QIYDGFVDPN AIDPAVFYDK DGGLWMTYGS YSGGIWVMQL DPATGKPLPD QGYGTKIMGG NYSAIEGSYV IYSPESEYYY MFTSFGGFAQ KDGYNIRISR AKNPNGPYVD AAGLDMIGAT AAGNIADYGV KLMGGFQFVA HPGDVGHDHG YLSPGHNSAF YDAQTGKYFL VFHTRFPDTG EGHSVRVHEL FLNSDGWLVA SPQRYAPING ANIVDEIDVT GDYQFINHAK NINTAAHKSV HVKLSRTWTN KGTVSGDVTG TYQQGDDNQI TLMLDNLGTF EGVLAWQWDP EQNKLMPTFS AISNDGASIW GVKLTDKTTE EILSASANGI SLPTEATEGT IDLPTNGTRG ATIEWQSSDE SVIRADGTII RPNVGEGDKV VTLTATIMVN GKKVTKTFQI TVFAHKTYNR IAHYSFENNL KDSLGLFSDG QPTGDRIFKA GDAIGYATGF EGQALSLDGA HGVLLPSGII SSYEYTVSFW ASPAVITGFT TAFFGAVNEQ TAEDGSKFSN TWVSLLPQGW DGNTMFWSHN IDTSGSSVLE TWFDGVMGER IAENTWSHLA FSVNKGLVKV FINGVERFSS GNLANYFTGA QGVFGLGVNY WDVPYNGLID ELKVYEAALT AEEVKALDID KLADSELLSS ATAILELGDL SAVRENIELP VTGPYASAIS WESSDPTTID THGGVTQPVR GEEDKVVTLT ATLKLGNATQ TKVFTATVKA KNPPTPVAIY SFEDNLNDST ANFGAGTVVG NLIGVEGGKI SYVDGAVGKA AVFDGASGIV LPNNLIKDYT YSVSMWLNPE QLNKYTTALF GYATDSSWTS VLPGGQNDYE RMVLWSGTAW YDGRTGFVMP KSQWTHLAYT VNGGEVKVYI NGELKFTGAN FPNIFSVPTT KFAVGVNFWD APFKGAIDEI KFYDEAITEQ DVADLFGESN Q
|
| |