Gene Shewana3_2075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2075 
Symbol 
ID4476321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2483751 
End bp2484968 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content52% 
IMG OID639726660 
Productinner-membrane translocator 
Protein accessionYP_869711 
Protein GI117920519 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.716718 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000028911 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAGCT CAGCCGAAAC CCTATCATCC ACACGCATGT CCGCCGATTT GATCTCACCC 
CAGATGAACG CATCTGAGGC GCATTCATCT GAGCGGCAAC CGCGGATGCA GGAAAGTCAT
AAGACCATGG TTCAAGAAAA AAACGCCCGT TACCAAGCGG GCAAGTCGAC CTCCATGGGT
CGATATCTCT GGCCACTATT GGCATTAAGT ATTCTGTTAC TGGCCAATCT GTTTATTGAC
AGCAGTTTCT TCAATATCAG CTATCAAGAC GACAGACTCT ATGGCTCTTT GATTGATATC
TTAAATCGCA GTGCACCCGT GGCGCTGCTC TCGATTGGTA TGAGTCTCGT GATTGCCACT
GGCGGAATTG ACCTGTCGGT AGGTGCCGTG ATGGCGATTG CGGGCGCGGT TTGCGCGAAT
CTACTGTTAG TGCCGGATAT CAGTTTAGTC ACCGTCATTG CAGCAGGCCT TATCGTCGGG
CTCTTAGCTG GCTGTATTAA TGGTGGGCTG GTGAGTTTCT TAGGCATTCA ACCGATTGTC
GCGACCTTGC TGCTCATGGT GGCGGGGCGC GGTGTCGCTC AGCTTATCAA CCAAGGGCAA
ATTATCACCT TTCAGCACCC AGGCTTTGCC GCCATTGGCG TGGGCCAGTT TTTAGGCCTG
CCGATGCCAG TGTGGATTGT GATTGGGATG CTAACCTTCA GTCAATTACT GCTGCGTAAA
ACCGCTTTAG GGCTTTTTAT CGAAGCGGTT GGTTGTAATG CCAAGGCGAG TCGTTACCTT
GGGATCAACG ATAAATCCAT CAAACTGTTC GCCTATGGCA TTGCGGGTTT GTGCGCGGCA
TTGGCCGGGA TGATCAGCAC CGCCGATATC CAAGGCTCGG ATGCGAATAA CGCTGGACTT
TGGCTTGAGC TGGATGCCGT GCTGGCCGTA GTCATTGGCG GCGCAGCGCT CACGGGCGGG
CGTTTCTCGT TAATTTTGTC GGTCGTTGGC GCGCTGATCA TTCAAACCTT AGCGACCACC
ATTATCGTCA GTGGTTTACC CGCTAAGTTT AACTTGCTGA TCAAGGCCAT CGTTATCCTG
ACCGTGCTGC TGTTGCAATC GGCTAAATTT AGGCGCCAAT TGTCGGCGCT GTTCAAATCC
AAGCGCCATG CGGATGCCAA ACCAGCAGAA AAGGCCACAA GTGCAAAAGC CAGTGCCGCA
ACAGGAGAAA AACTATGA
 
Protein sequence
MKSSAETLSS TRMSADLISP QMNASEAHSS ERQPRMQESH KTMVQEKNAR YQAGKSTSMG 
RYLWPLLALS ILLLANLFID SSFFNISYQD DRLYGSLIDI LNRSAPVALL SIGMSLVIAT
GGIDLSVGAV MAIAGAVCAN LLLVPDISLV TVIAAGLIVG LLAGCINGGL VSFLGIQPIV
ATLLLMVAGR GVAQLINQGQ IITFQHPGFA AIGVGQFLGL PMPVWIVIGM LTFSQLLLRK
TALGLFIEAV GCNAKASRYL GINDKSIKLF AYGIAGLCAA LAGMISTADI QGSDANNAGL
WLELDAVLAV VIGGAALTGG RFSLILSVVG ALIIQTLATT IIVSGLPAKF NLLIKAIVIL
TVLLLQSAKF RRQLSALFKS KRHADAKPAE KATSAKASAA TGEKL