Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2073 |
Symbol | |
ID | 4476319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2481278 |
End bp | 2482219 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639726658 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_869709 |
Protein GI | 117920517 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.269264 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000246592 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACATA ATAAAATCAT TACCGCATTG GGATTATGGG CTGTCAGTGC TACTTGTGCC TACGCCACCA CAGTGGGCTT TTCACAGGTT GGCTCCGAGA GTGGTTGGCG TACCAGCTTT AGCGAAGCGG TCAAGGCCGA AGCTAAACAG CGTGGCATCG ATTTGAAATT TGCCGACGCT CAGCAAAAAC AAGAGAACCA AATCAAAGCC GTGCGCAGCT TTATCGCCCA AGGTGTGGAT GCCATTATTA TTGCGCCCGT GGTAGAAACA GGTTGGAAAC CCGTACTGAA AGAAGCCAAA CGCGCCAAAA TCCCAGTCGT GATTGTCGAC CGTAATATCA AGGTCGATGA TGACTCCTTA TTCCTTACCC GTATCGCCTC CGACTTTAGC GAAGAAGGCC GCAAGATTGG CCAATGGCTT ATGGATAAAA CCCAAGGTAA CTGCGATATC GCCGAGTTGC AGGGCACGGT AGGTGCAACC GCAGCGATTG ATCGCGCAGC CGGTTTTAAC CAAGTGATTG CCAATTATCC CAATGCCAAG ATTGTTCGTA GCCAAACTGG CGAATTTACC CGTGCTAAGG GTAAAGAAGT GATGGAAGGT TTCCTCAAAG CCCAAAACGG TCAGCCACTG TGCGCCGTGT GGTCGCATAA CGATGAAATG GCCCTCGGCG CCGTGCAAGC CATTAAAGAA GCCGGTTTAA AACCGGGCAA AGATATTCTG ATTGTCTCCG TGGACGGTGT TCCCGATTAC TTTAAGGCGA TGGCCGATGG CGATGTCAAT GCCACGGTTG AGCTTAGCCC ATACTTAGGC GGCCCAGCGT TTGATGCTAT CGATGCCTAC CTGAAGGGCA ATAAGGATCA GGCCAAGCTT ATTAGCACCA CGGGTGATGT GTTTACCCAA GAAACCGCTG CCGCAGAGTA CGAAAAGCGC CGCCAGCAAT AA
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Protein sequence | MKHNKIITAL GLWAVSATCA YATTVGFSQV GSESGWRTSF SEAVKAEAKQ RGIDLKFADA QQKQENQIKA VRSFIAQGVD AIIIAPVVET GWKPVLKEAK RAKIPVVIVD RNIKVDDDSL FLTRIASDFS EEGRKIGQWL MDKTQGNCDI AELQGTVGAT AAIDRAAGFN QVIANYPNAK IVRSQTGEFT RAKGKEVMEG FLKAQNGQPL CAVWSHNDEM ALGAVQAIKE AGLKPGKDIL IVSVDGVPDY FKAMADGDVN ATVELSPYLG GPAFDAIDAY LKGNKDQAKL ISTTGDVFTQ ETAAAEYEKR RQQ
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