| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2065 |
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| Symbol | araD |
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| ID | 4476311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 2472373 |
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| End bp | 2473068 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639726650 |
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| Product | L-ribulose-5-phosphate 4-epimerase |
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| Protein accession | YP_869701 |
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| Protein GI | 117920509 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
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| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000152307 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000244495 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTCTTTTT TAGAGCTAAA ACGCGAAGTA TACGAAGCCA ACATGGAGCT TGAGAAGCGC
AAACTGGTGA CTTACACCTT TGGCAACGTT TCACAAATTG ATCGCCAACT CGGCGTCATT
GGTATCAAGC CCAGCGGCGT GCCCTATGAA GATTTGAAGG TTGAAGACAT TGTGATTGTT
GACCTTGAGA ATCAAATCGT AGAAGGGCGC ATGCGTCCTT CATCCGATAC CAAGACACAC
ACCTATTTGT ATCGCCAGTG GCAGAGTATT GGTGGCATTA CCCATACCCA CTCGACCTAC
GCCACTGCCT GGGCGCAGGC ACAGATTGCG ATTCCCTGTT TAGGTACAAC ACAGGCCGAT
TATGTGTACG GTGAAATCCC ATGCACAGCG GTGATGCGCA ACGATCAGAT CAGCCGCGAC
TACGAAGAAG AAACCGGCGT GCAGATCCTC GATTGCTTCG CCGACCGAGA TCCTAACGAG
TCGCCCATGG TAATCGTTGC AGGTCATGCA CCGTTCACTT GGGGCGCGAA TGCGGCTAAA
TCCGTATATC ACGCCGTGTT GCTCGAAGAA ATCGCTCGGA TGGCGTATCT CACCAAAACA
TTATCACCAG GTATCAGTCA GTTAAAACAA GAGCTTATTG ATAAGCACTA TTTGCGTAAG
CATGGAAAAG ACGCTTATTA CGGCCAAAGC AAGTAA
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| Protein sequence | MSFLELKREV YEANMELEKR KLVTYTFGNV SQIDRQLGVI GIKPSGVPYE DLKVEDIVIV
DLENQIVEGR MRPSSDTKTH TYLYRQWQSI GGITHTHSTY ATAWAQAQIA IPCLGTTQAD
YVYGEIPCTA VMRNDQISRD YEEETGVQIL DCFADRDPNE SPMVIVAGHA PFTWGANAAK
SVYHAVLLEE IARMAYLTKT LSPGISQLKQ ELIDKHYLRK HGKDAYYGQS K
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