| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2062 |
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| Symbol | |
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| ID | 4476307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 2467952 |
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| End bp | 2469223 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639726646 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_869698 |
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| Protein GI | 117920506 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0300208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000445081 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACGT CTAGTAATAT CTTTGTAAAT ATGAAGTTTT TTATATTTTT ATTCTATTTG
GCCTTATTAA GCATGTTAGG TTTTATTGCC ACTGACATGT ATTTGCCTGC TTTCAAAGCA
ATTGAAAGTT CGTTTAATTC TACACCGTCT CAAGTGGCGA TGTCGCTCAC CTGTTTCTTG
GCTGGTTTAG CCTTAGGGCA ACTGATTTAT GGCCCTTTGG TCAGTAAACT CGGCAAACGT
TATGCTCTTA TTCTCGGCCT CGGCATTTTT GCGCTTGCCA GTGTGGCCAT CGCCAATAGC
GACTCGATAC TGATGCTGAA CATCGCTCGC TTCTTCCAAG CCGTAGGCGC CTGTAGTGCA
GGGGTCATCT GGCAAGCAAT TGTGGTCGAA CAGTATGATG CCGAAAAAGC GCAGGGGATT
TTCAGTAACA TTATGCCGTT AGTGGCATTA TCACCCGCAT TAGCCCCCAT CCTTGGCGCT
TATATTCTGA ACGATTTTGG ATGGCGTGCA ATCTTTATCT CATTGTGTGT GATTGCCTTT
TTGTTGGTAT TGATGACCTT ATACTTTGTG CCGAGCCACG CAGAGCATCA GGATACTAGG
CCAAGCGCGG TTTCCTACGG GCAGATTTTG AAAAATACTC GTTACCTTGG CAATGTGGTG
ATATTTGGTG CCTGTTCGGG TGCGTTTTTC GCATATCTTA CTGTGTGGCC GATTGTGATG
GAGCAACACG GCTATCAGGC AACTGAGATT GGGCTGAGCT TTATTCCGCA AACCATCATG
TTTATTGTGG GCGGATACGC GAGTAAGTTA TTGATAAAAC GCATTGGTGC CGACCGTACA
CTCAACGTAT TACTGGCCAT TTTTGGACTC TGCGTTATCT CAATTGTGTT TTTCACCTTA
TTAATGAAGG CGGAAACTAT TTTCCCACTG CTGATTTCCT TCTCGATACT CGCAGCGGCG
AACGGGGCGA TTTATCCCAT TGTGGTAAAC AGTGCTTTGC AGCAATTCAC TCAAAATGCG
GCTAAGGCGG CAGGATTACA GAACTTTTTG CAAATTACCA TCGCCTTTGG CGCTTCAAGT
TTAGTCGCGC TCTGGGCAAG TTCAGGAGAA GTCGCCATAG GTTGGGGGAT TCTGAGCTGT
TCATTAGTAG TGATCTTAGG TTACCTGTTA AAAACCGAGC AAACTTGGGC TGATTTTGCC
AAACACTTTA CTGCGCCGGA TCCTGCTCGT CTTGGGATCA ATGCAGATAC GAAGCAAAAT
CAAGCAGATT GA
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| Protein sequence | MKTSSNIFVN MKFFIFLFYL ALLSMLGFIA TDMYLPAFKA IESSFNSTPS QVAMSLTCFL
AGLALGQLIY GPLVSKLGKR YALILGLGIF ALASVAIANS DSILMLNIAR FFQAVGACSA
GVIWQAIVVE QYDAEKAQGI FSNIMPLVAL SPALAPILGA YILNDFGWRA IFISLCVIAF
LLVLMTLYFV PSHAEHQDTR PSAVSYGQIL KNTRYLGNVV IFGACSGAFF AYLTVWPIVM
EQHGYQATEI GLSFIPQTIM FIVGGYASKL LIKRIGADRT LNVLLAIFGL CVISIVFFTL
LMKAETIFPL LISFSILAAA NGAIYPIVVN SALQQFTQNA AKAAGLQNFL QITIAFGASS
LVALWASSGE VAIGWGILSC SLVVILGYLL KTEQTWADFA KHFTAPDPAR LGINADTKQN
QAD
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