| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2022 |
|---|
| Symbol | |
|---|
| ID | 4476387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2417021 |
|---|
| End bp | 2418244 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639726605 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_869659 |
|---|
| Protein GI | 117920467 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0581728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000356379 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAACA TTAGAGCGCG CGATGGCAAA CTATTTTTCG ATTTCACTTA CGAAGGGATC
AGATGTCGAG AGCAAACGGT TTTGATTGAT AATCGATTAA ACCGATCAAA ATTGACCAAT
ATTTTGAATA CTATCGAAGC TGAAATTCGA CTGAATCGAT TTGTGTTTAA GTCCTATTTT
CCTTCGAGCT CAAGATGTAG CCAATTTTCA GAATATGACA TCAGAGTGCA ACAGCATTTG
GCTGAAAATG TTGAACCTTT GACTGTAAAT ATTATGTCAA ATATTCCTAC ATTCGAAGAG
TTTGTCGGCG AATGGGTTGT AGAAAACAAG ATTCAATGGA AAAAGAGTCA TTGTAAGAAC
ATACAGATGA TCATTGAATG TTACTTATTA CCTGCATTTG GTCATATTAG ATTAAATGAA
ATCACAAGGC CAAGTTTGAT TAAGTTTAGA GCTTCTATTG CTGACTCTAG ACGTACAGGC
ACTACAGAAA AACTAAGTAA CGACTGGATT AATCATGTAA TGACGCCACT ACGAGGGATC
TTAAATGAAG CAGCATTACG ATTTGACTTC CCTACCCCGT TTGTCAATAT CAAGCCTTTA
AGAATCGATA AGACGGTCAT AGAACCCTTT TCTCTAGCGG AAGTTCAATA TTTTTTAGAG
CACATTCGAG ATGATTTTAG AAATTATTAT ACCGTTAGAT TTTTCACTGC CATGCGAACA
GCAGAAATCG ATGGATTAAA ATGGCAATTT GTTAATTTAG ATCGTTATGA AATCTTAATC
CAAGAAACAC TTGTTGACGG TTACGTTGAA ACCCCTAAAA CATCAGCCTC TTATCGTAGT
ATTCAATTAT CACAACCTGT AGTTGATGCA TTAAAAAGAC AGCGAAAAGT AACTGGCAAT
AAGACTTATG TATTTTGTAA TGCGAGTGGC AACCCATTAG AGCACCGAAA TGTAACGAAA
CGAATTTGGT ACCCAGCTTT AGACGAAATG TGCTTAAAAA GAAGACGCCC ATACCAAACA
AGGCACACTT GCGCAACGTT ATGGCTTGCA GCAGGTGAAA ACCCTGAATG GATAGCCAAA
CAAATGGGAC ACAGCACAAC AAAAATGTTG TTTGAAGTTT ATAGCCGTTA TGTTCCAAAC
GCGACTAGGC AAGACGGTAG TGCATTCGAT CGACTCATTC AGCATGTTAA TTTTGACTTT
AACCGGGAGA GTTCAGATGA GTAA
|
|---|
| Protein sequence | MGNIRARDGK LFFDFTYEGI RCREQTVLID NRLNRSKLTN ILNTIEAEIR LNRFVFKSYF
PSSSRCSQFS EYDIRVQQHL AENVEPLTVN IMSNIPTFEE FVGEWVVENK IQWKKSHCKN
IQMIIECYLL PAFGHIRLNE ITRPSLIKFR ASIADSRRTG TTEKLSNDWI NHVMTPLRGI
LNEAALRFDF PTPFVNIKPL RIDKTVIEPF SLAEVQYFLE HIRDDFRNYY TVRFFTAMRT
AEIDGLKWQF VNLDRYEILI QETLVDGYVE TPKTSASYRS IQLSQPVVDA LKRQRKVTGN
KTYVFCNASG NPLEHRNVTK RIWYPALDEM CLKRRRPYQT RHTCATLWLA AGENPEWIAK
QMGHSTTKML FEVYSRYVPN ATRQDGSAFD RLIQHVNFDF NRESSDE
|
|---|
| |