| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2004 |
|---|
| Symbol | |
|---|
| ID | 4476368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2388239 |
|---|
| End bp | 2389732 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726586 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_869641 |
|---|
| Protein GI | 117920449 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.130422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCA TTATTTTCGC CAATCGCCAT GGACACGAAC TGACACCGCT GGATAAACAA
TACTGCCCAG CATTACTCCC CATGGGAAAC CGTGCCCTGA TTGAATACAC CCTAGAAGAT
GTCGCCAATG CCGGGATTGT TGAGGTAAAA CTGATTATCT CAAGCCATGC CAAAGAACTC
GAAGCGCATC TTGGCGATGG TAGCCGTTGG GGATTAAAGA TTGATTACTT CCTCAGCAGA
GAACAAGAGT CTGTCAACTG CGTGATGTCA CGACTAAAAC TCGATTTCGA ACAAGATTAT
CTCGTTGTAA GGGGCGATAT GCTGCGCTCC CCCTGCATTA AACGCTTTAT CGATTACAGC
CTAAAGCGAC CTTTACACTT AGTGTTACCC ATAATGGCCG ACTGCAATCC TGGTATGCTG
CTATTGCCTA GCGCCTGTAA CCATCTGTAT CTCCTCGATT GGCCCTTAGA ACGAGATCCA
ACGGTCACTA ATGCCATGAT GGAACCGCTA CCTGGGCAGT GCGCCATGTT GGACTCCTTC
GAATCCTATC TTAATGCCAA TTTAGCCATA GGCGATGGCA GCTTTACTGG ACTATCTCCT
TCTGGTCGCC CCACTCCCAG TGGCCGACAT GCCAAGTTTT TTCACCTAGG GGCTAAGGCG
CAAACGGGCA AATTGGACCA ACATGCCGCC TGGGGCGCGA TTGGAGAGCA AACCTGGATA
GCCCCCGATG TGGATATGCA CGATCAACTG ATCATTGGCG ATCAATGTGT TATCGAGAAA
AACTGCCGTT TGAGTAACAG CGTGATCCTG ACGAACAGCT TTGTCGGTGA AGGACTGAAT
GTCGATAACT GTATTATCAG TAAAAATCTG CTGATCAATG TCGGATTTAA CACTGCCATC
GAAGTTGATG ACCCTAGGCT TATCGCCTCA ACCGAGCAGA ATTTACACGC CCATGTACCT
TGCTCGAGTC GGCTTATGGC TTTGATATTG CTTGGCTTAA CTTTACCCTT CTGGCCATTA
CTCTGGCTGT GGAGCTTATG CCATTCATCA ACTCTAGGCC AGTCTAGACC AGCAGTGAGT
ATTGCGTATC AGCCCATTAA GCTGTTGCGC GTTAATTTGC CGCCATCAGG CATGGGATTA
TCGCTGCTAC CACAGCTTTA TCAAGTATGT TTGGGGCGAT TATTCCTGCT AGGCAGTCAA
TCCCCTGAGA TGCATTCAGC ATCCGAGCTT AGCGAAGCTA CGCCACTATA TGGCGTTTAC
GGTCCGCTGC AACTGCTTGG CGCCGAACTG CCAGAGGAAG AACAAGGGCT GATTGAGCAG
GAGTTTCTTA GCAAGCCTAA GGCATCGCAA TGTTATCAAG TGATCAAACT GTGCTTTCAA
TTAGTTTCAA AATCAGTGGC TTCAACACGC TCTGCCACGC CCAAACAGCC CAGCACAAAT
CAACTTAGTG CAAGCCAGCC AGATATCGCC AATGAATGGG GGAACGGACA ATGA
|
|---|
| Protein sequence | MQAIIFANRH GHELTPLDKQ YCPALLPMGN RALIEYTLED VANAGIVEVK LIISSHAKEL
EAHLGDGSRW GLKIDYFLSR EQESVNCVMS RLKLDFEQDY LVVRGDMLRS PCIKRFIDYS
LKRPLHLVLP IMADCNPGML LLPSACNHLY LLDWPLERDP TVTNAMMEPL PGQCAMLDSF
ESYLNANLAI GDGSFTGLSP SGRPTPSGRH AKFFHLGAKA QTGKLDQHAA WGAIGEQTWI
APDVDMHDQL IIGDQCVIEK NCRLSNSVIL TNSFVGEGLN VDNCIISKNL LINVGFNTAI
EVDDPRLIAS TEQNLHAHVP CSSRLMALIL LGLTLPFWPL LWLWSLCHSS TLGQSRPAVS
IAYQPIKLLR VNLPPSGMGL SLLPQLYQVC LGRLFLLGSQ SPEMHSASEL SEATPLYGVY
GPLQLLGAEL PEEEQGLIEQ EFLSKPKASQ CYQVIKLCFQ LVSKSVASTR SATPKQPSTN
QLSASQPDIA NEWGNGQ
|
|---|
| |