| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1995 |
|---|
| Symbol | |
|---|
| ID | 4476359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2377883 |
|---|
| End bp | 2379940 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726577 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_869632 |
|---|
| Protein GI | 117920440 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3211] Predicted phosphatase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.266235 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0568829 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG CCACCTTTGA TCCAACACTT TATAATAAAA GTAATAACGA ACCTTTTAAT
CAAGTGTTGG ATAAACATTT ATCCCGTCGT AATTTTGTTA AAAGTGGATT AGGCCTAGGT
GCGATGACCG CCTTTGCAGG CATGGGATTA GTCGGTTGTG GTTCGGACAA TTCCCCTGCC
CCTACACCTA TTGATCCCGT TCCGCCATTA CCACCGACTC AAAGTAGCGC CAAATTAAGC
TTCACATCAG TCGCCGGCTC CCGCCTGGAT GCGGTTGTGG TACCCGAGGG TTACAGCGCG
CAAGTACTTG CCCCTTGGGG AACACCACTA AATGCTAAGG CCGCACCTTG GAAAGCCGAT
GGCAGCAATA CCGCCGATGA CCAAGCAAAC TCTGTCGGTA TGCATCATGA TGGTATGCAT
TTCTTCCCAT TGAATGATGC CGGCGATGAC GGTTTACTCT GTATCAACCA TGAATATATC
GACGAGATAG CCCTGCATCC TAATGGCCCA ACCGTAGATG AAACCACTGG ATTACGTACC
ATCATCGATG AAATCCGTAA GGAAATTAAC GCCCACGGCG TGTCGGTAGT AAGAATTAAA
CTCGTTAATA ATCAATGGGA AGTTGTTTAC AACGACAGTC ATAACCGCCG CTTTACCGGC
GCAACTGTGA TGGATATCGC CGGGCCTCTC GCCTATTCGC CACTACTCGA AACCCGTTAC
TCACCCGATG GCAGCCAGGC TCGTGGCACC TTAAATAACT GTGGTAATGG TTACACGCCT
TGGGGCACCT ATTTGACCTG CGAAGAAAAC TGGCCGGGTT ACTTTGCCAA CCGCGGCACT
TTAGCCGCCG ATCAAGCCCG TATCGGGATC AGCAAAAGCA GCACCCGCTA TGGCTGGGAT
GACTTAGCGG GTCACGCCGA GGAGCGTCTC GATGAGTTCG CGCGTTTTGA TGTCACGCCA
AAGGGCAATA GTGCACAAGA TGATTACCGC AACGAGGCTA ATGGCCACGG CTATATCGTT
GAAATTGACC CCTATAATCC AAGCTCACGC GCCATCAAAC GCACTGCCCT TGGTCGCTTC
CGCCACGAGG GATGTACCTT CGGAAAATTA ACCGAAGGTA AACCTGTGGT GTTCTACTCT
GGCCACGATT CTCAATTCGA ATACTTATAT AAATTTGTGT CGAATGCGCT GTGGGACCCA
CAGGATGCAA ACAGCACAAA TCGCCTGCAA ATGGGTGATA AGTATATGAA TGAAGGAACA
TTGTATGCCG CTAAGTTTAA CGAAAATGGC GCTGGTATAT GGTTGCCTTT AATCTTAGAC
AGCCAAACGA CAGACGGTAA AACCTTAGGT GATAGCTTTG CCAGTCTGGC CGAGATTATC
TTAAATACTG CAGGTGCGGC GGATTTAGTC GGCGCAACGC CTATGGACCG CCCTGAGTGG
TGTGCGGTTG ACCCCTTCAC AGGTTCAGCC TACTTAACAC TGACCAATAA CTCTAAGCGT
ACCGAGGCAA ACCCAGCTAA TCCAAGACTT AAAAACTCCT TTGGACATAT TATTCGTTGG
GATGAAGGTG ACAAAGACAC TGAATTCACA TGGGATATTT TTGTCTTTGG CTCACCGAGT
GATGGCAATG CCGAGACCAA CCTGTCGGGC TTAACGGATC TAAACCAATT TGCTAGCCCC
GATGGATTGG CCTTCGACGC CCGCGGTATT TTATGGGTGC AAACCGATAA TGGTGCCAAA
GAAGTCGCCG AAGAAACCAA TGATCAAATG CTAGCGATTG TGCCATCAAC CTTAGTCGAC
AGCGCAAACA AGCAAGCCAG CGTCACGGCC GAAAACCAAA TGGAATTAAA GCGTTTCTTT
GTTGGGCCAA ATGATTGCGA AGTCACAGGT TTTGCTATTA GCCCAGATTA CACTTCGGTT
TTTGCCAACA TTCAGCATCC AGGTAACTGG CCCTATTCGA ATAATGCCGC CGAAATAACG
CCTGCTGGTA CCGTACTGCG ACCACGTGCG GCAACTGTGG TGATCCGTAA ACTCGATGGT
AAAGAAGTGG CGGTCTAA
|
|---|
| Protein sequence | MSKATFDPTL YNKSNNEPFN QVLDKHLSRR NFVKSGLGLG AMTAFAGMGL VGCGSDNSPA
PTPIDPVPPL PPTQSSAKLS FTSVAGSRLD AVVVPEGYSA QVLAPWGTPL NAKAAPWKAD
GSNTADDQAN SVGMHHDGMH FFPLNDAGDD GLLCINHEYI DEIALHPNGP TVDETTGLRT
IIDEIRKEIN AHGVSVVRIK LVNNQWEVVY NDSHNRRFTG ATVMDIAGPL AYSPLLETRY
SPDGSQARGT LNNCGNGYTP WGTYLTCEEN WPGYFANRGT LAADQARIGI SKSSTRYGWD
DLAGHAEERL DEFARFDVTP KGNSAQDDYR NEANGHGYIV EIDPYNPSSR AIKRTALGRF
RHEGCTFGKL TEGKPVVFYS GHDSQFEYLY KFVSNALWDP QDANSTNRLQ MGDKYMNEGT
LYAAKFNENG AGIWLPLILD SQTTDGKTLG DSFASLAEII LNTAGAADLV GATPMDRPEW
CAVDPFTGSA YLTLTNNSKR TEANPANPRL KNSFGHIIRW DEGDKDTEFT WDIFVFGSPS
DGNAETNLSG LTDLNQFASP DGLAFDARGI LWVQTDNGAK EVAEETNDQM LAIVPSTLVD
SANKQASVTA ENQMELKRFF VGPNDCEVTG FAISPDYTSV FANIQHPGNW PYSNNAAEIT
PAGTVLRPRA ATVVIRKLDG KEVAV
|
|---|
| |