| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1989 |
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| Symbol | emrD |
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| ID | 4476353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 2367658 |
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| End bp | 2368902 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639726571 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_869626 |
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| Protein GI | 117920434 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000209754 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGTCAG ACGATGCACC GTCTTTAATC TCACAAAAAG CGCCGACACC CGCCGCAGGC
AGCGCCACTC AGTTACTCTT TATGCTGGTA TTTATGGTGG CCTGTGGGCA GATGGCACAA
ACTATTTTTG TCCCCGCACT CCCCCTTATC GCCCAAGGCT TAGCTGTGGA TGCCAGTAAA
TTGCAGGCGG TCATGGCTTG CTATCTGCTC GCCTACGGCC TATGTCAGTT TATCTATGGC
CCATTATCCG ACCGAGTTGG GCGTAAAATG CCGCTGCTCA TTGGCATTGG GATTTTTATC
CTTGGCGCCT TGATGGCGGC AGAGGCTACA AGCTTTAATC AATTGATTTT CGCAAGCCTG
CTACAGGGGT TAGGAACCGC GAGTGCGGGC GCCTTGTGCC GCAGTATTCC AAGGGACCAT
TACTTCGGCG ATAACTTAGT TAGATTTAAC AGTTATGTGT CCATGGCCGT GGTGTTCTTG
CCCTTGGTCG CGCCCTTCTT AGGCAGTTTT GCCTCAGCTT ACTGGGGGGT GCAGGCTGTG
TATTGGGTGC TGTTTGGATT TGGCAGTTTG GTTTGGCTAC TGCTCTGCTT TGGTTTTAAG
GAATCTTTAC CCAAGCATAA GCGAGAGCAA CAACCCATAT TGGCATCCTA TCGACATGTA
CTGCGCCACC GCAGTTTTCG AGCCTATTTG CTTTCGCTTA TCGCGACCTT TGCAGGCATT
GCCGCCTTCG AAGCCATTGC GGGCGTACTC TATGGCCAAT ATTTGCAGCT CTCGCCGTTT
ATGGTGAGCT GTTATTTTGT CGCGCCCATC CCTGGATATT TACTCGGCGC CCTGATTGCT
GGTAGGCAAA AACAGGCGCA GCGTACGGTT TTACAAGGCG TTGCACTGCT AGGCGCCGGC
GCACTGTTTA TGTTGATCCC CGGTATTTTT CAGCTGGTCG TGGGTTGGAG TTTATTGATA
GGCTCAATTT TGTTTTTCAG TGGCGCTGGC ATGTTATTTC CGACATTAAC CTCGGCCGCG
CTAGAGCCGT TTCCACGCCA AGCAGGCATT GCGGGCGCCC TACTCGGTGG CCTACAAAAC
TTCGGCGCGG GACTCGCTGC CTTAACCATG TCGCTCGTAC CAATGGGCGG CCAGTTAAGC
ATTGGTTTAC TGAGCGCGCT GATGGTGCTG TTAGTGATTG TCGCCTTGCA TTATGCAAGG
GATCAAAACG ATACCCACCA CACCCTGTTA CCGCAAAATC CATAA
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| Protein sequence | MMSDDAPSLI SQKAPTPAAG SATQLLFMLV FMVACGQMAQ TIFVPALPLI AQGLAVDASK
LQAVMACYLL AYGLCQFIYG PLSDRVGRKM PLLIGIGIFI LGALMAAEAT SFNQLIFASL
LQGLGTASAG ALCRSIPRDH YFGDNLVRFN SYVSMAVVFL PLVAPFLGSF ASAYWGVQAV
YWVLFGFGSL VWLLLCFGFK ESLPKHKREQ QPILASYRHV LRHRSFRAYL LSLIATFAGI
AAFEAIAGVL YGQYLQLSPF MVSCYFVAPI PGYLLGALIA GRQKQAQRTV LQGVALLGAG
ALFMLIPGIF QLVVGWSLLI GSILFFSGAG MLFPTLTSAA LEPFPRQAGI AGALLGGLQN
FGAGLAALTM SLVPMGGQLS IGLLSALMVL LVIVALHYAR DQNDTHHTLL PQNP
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