Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1970 |
Symbol | |
ID | 4479424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 2346063 |
End bp | 2346737 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639726552 |
Product | HAD family hydrolase |
Protein accession | YP_869607 |
Protein GI | 117920415 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000840588 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000283984 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTTTAG CTGAGGTTAA AGGGGTCTTA TTCGACCTTG ACGGTACCCT TGCCGATACC GCGCCGGATC TGGTTCAGGC CCTTAACCTC AGTTTGTCGG ATGTCGGTAT CGCAGCAAAA CCTTTAGCAG ATATGCGTAG CGCTGCCTCC CATGGCAGCT TTGCCTTAGT CGATGCGGCG ATTCCCGGCG CGGATGACGC CCTGCGCACT CAAGTACAGC AAGGACTCCT CGCCCACTAT CAAAGGATCA ATGGCGACCA TTGCCAGTTG TTTGATGGTA TCGCCCCCCT GCTCGATTGG CTCGAGTTGT GCCGCGTACC ATTTGGGGTG ATCACCAATA AACCCGCCCG CTTTACTCGC CCTCTATTGC ATAAACTTAA GCTCAGCTCA CGTATGCCGG TGATGATCAG TGGCGATTCC ACTCGTTATC CCAAGCCCCA TACCGCACCA ATGCTATTGG GCGCACAGCA ATTGCAGTGC CTACCACAGC AAATCCTCTA TTTAGGGGAT GCCGAGCGGG ATTTACTCGC GGCCCAAGCG GCGGGCATGC TCGGCGTTAT AGCGCTGTGG GGATATTTGG GTGAGGCCGA TACGCCCGAT GCATGGCCTG CCTATGCACA GTTTACCTCG CCATCGAGTT TGCATTCGGC ATTAAGCCAA GCATTAGCGA AATAG
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Protein sequence | MSLAEVKGVL FDLDGTLADT APDLVQALNL SLSDVGIAAK PLADMRSAAS HGSFALVDAA IPGADDALRT QVQQGLLAHY QRINGDHCQL FDGIAPLLDW LELCRVPFGV ITNKPARFTR PLLHKLKLSS RMPVMISGDS TRYPKPHTAP MLLGAQQLQC LPQQILYLGD AERDLLAAQA AGMLGVIALW GYLGEADTPD AWPAYAQFTS PSSLHSALSQ ALAK
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