| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1952 |
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| Symbol | |
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| ID | 4479749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 2321114 |
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| End bp | 2323927 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639726534 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_869589 |
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| Protein GI | 117920397 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.105215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTTAG TGCTCCAGCT TATCGTGATC CTGTGTTGCA TATTCATCAA TAACGCAGTT
AACGCCAGTC AAGGACAGAC TGAGTCACTG ATTGTGGTGA TGGGGGAAGA CAGCTTTCCC
TATCAGTTTG TCGACAACGA CGGCGAAGCC ACGGGTTTAT TAGTGGATCT GTGGAAGGAA
TGGGGCAAGC GTACCAATAC ACCATTAGTG TTTGTGGCGC GCCACTGGAA TGAGTCATTA
CAGCAGTTGC AGCAGGGCAA AGCCCAAGTG CATATCGGTA TGGGACAGAC GCCCGAACGT
GAGCAGTTAT TTGATTTCGC AGAGCCTATT GCCGATGTCA GTACCTATCT TTACCTGCAT
AAATCCTTGC AGGGTAAAAA GTCCATTAAG GAACTTATTC CTTACCAAAT CGGGATTGTG
AGTGGCTCAT CCCATGAGGC TGAGCTTCGC CGTATCGAGC CGAATTTAGT CTTCAAATAT
TATGAAAGCC GTGAAAAATT GCTGGCGGGG GTTGCAGCGG GCGAAACGGT CGTCTTTGCT
GGACTCGATG GCTATCTACG CGATCCCGCA TCAAGCCAAG CGATTGCGGG CAGTTTTCCC
ATCAGTGCGC GTATTCCAAT CAAGGCCATG CAGTTTGTCC CCGCGGTGAT GAAAGGCAAT
CAAGCTTTAG TCGAGAAGAT TAATCAGGGC TTTCATTCAC TCGATGCACG TTTTGTGCAA
CAAACCGAGC GCCGCTGGTT AGGCTATCAC GGGCAAAAAG CGGGTCTTGT GGTGGCGATG
CAGCTAGGCG TTGAGCCCTT TGTCGATTTA GGCGTCGATG GCTTGCCCCA TGGATTTTAT
GTGGATCTCT GGCAACTATG GTCGGCGAAG ACCGGCATTA ATGTGGATTT TATCTCGGGC
GACATGAATG CCAGTGTCAA TGATGTGCGC CAAGGTTTAG CCGATGCGCA TATTGGTTAC
CCTGAAAGTG ACGAATTGAA AACTGGCTTA ACCCGCGCAT GGCAACTCTA TACGGTGAAG
AGTCGGTTGT TTTTATATCA GCAACAACTG ACCGATTTAC AGAGTTTAAA AGGCAAACGT
ATCGGTGTTG TGCCGACAGC GCCTTATCTC GTTGCGCTGC GTAAAGCGCT GCCCGATGTC
ACGCTGCGTT ATTACGAAAA TATGGACAGC ATGGTCGCGG GTGCGCGCTC GGGCGAGATC
GCAGGCTTTG TTGCCGCGGG TGCATGGACT TCCCACTATT TATTGCAAAA TAAGGCTTGG
TCCGAATTTC ATCAATATCC TGAGCTTGAG TTTCCGACCG ATGTGTATGT ACTGACCCGC
AGTGACGATC CCGGCTTAAC CCAGCGCATT ACTAATGGTT TTCGCAGTAT TAGCATGCAG
GAATTTGCCG AGGTAGAGCA GAAATGGATG CTTAATCCTA AGGATCGCAT TTTTAACCAG
AAGGGATTAC ACGGCGTTCA ACTCTCAAGC AGTGAGCAAG ATTACCTCTC GCAACTCGGT
GAACTTAAAC TCGGTTACTT GAAACAGTGG CCGCCAATGG AGTTTAGCGA TGAGCAAGGC
CAGTTTGCGG GGATTAATAG CGATGTCAGC CAGCTGCTAG CCGAGCAACT GCGGATTAAT
ATTCAGCCCG TCGCCTTTGA CGATTGGCAT TCGTTGATCG GCGCCTTGCG TTCAGGCGAG
ATTGCACTGG CGGGCAGTAT TGCTCAAACC GCCGAGCGCC AGCAATTTTT AACCTTTAGC
GAACCCTACT GGCCATCGCC GTGGGGTTTA GTGTCGCAGC TTGAGCAAGT CTCGGTATTT
AATCTGGCGC AATTGGCGGG ACAAAGGGTT GCAGTGGTGG AGGGCTACCA TCTGGTGGCG
CAACTGATGG CATTGCAGCC TTCGCTCAAA CTGGTGCTGG TGCCTGATAC CCAGTCGGGA
CTCTCGGCGG TCAACGATGG CCATGCAGAT GTGTTTATCG ATAAAGTCGT GACGCTGGCC
TCTGAGCTAA AAACGGGTCA ATATCCGTTG CTGAAAATGT CACTCCTCAG TGACTTAGCC
GATCAGCACA GCCACTTCGG ACTTAATCCG CAGTATGCAC CGTTGGTTCC CTTAATCAAT
CGCGTATTGG GGCAAATCGA TCAACATACG CAGCAACAAA TCTATTCCCA TTGGGTGAGT
TTTTCTTTAA CGACGGATAA CAGCCAATAT CTGCAATGGA TCCGTTATTT ATTGCTCGGG
GCGTTAGTGT TATCTGGCGT GATGGTGGCG GTTTTAGTCG TTAATCGTCG TTTAAACCTT
GAGATTACTC GCCGAATTGC CGCTGAAAAG CGTTTGCAGC ATGTTGCAAG CCACGATGCC
TTAACCCAGT TGCCTAATAG GGCACTGTTG GATGATAGAT TGTCACAGGC CTTACTTGCC
CATCGGCGGG ATCATAGCCA TTTCGCCTTG TTGTTTATCG ATTTAGATGG CTTTAAGCAA
ATTAACGATC AATATGGTCA TCCTGTGGGG GATGCACTGC TATTAAAAGT GGCGGGATTA
TTGACCAAAG CCATTCGCAA TTCTGATACA GTGGCAAGAT TCGGCGGCGA TGAGTTTGTG
ATCCTGCTAA ATCGTGTGCA AGATCTCGAT GCCGCGACCC AAGTTGCTGA TAATATTCTG
CACTCGTTAT CGTCACCGTT TAGCATAGAA GGGGTGACTG TTGAGGTGGC TATCAGTATT
GGCGTGGTCA TTTATCCCCG CGATGGCGAT ACGGCCATCG AGTTAATGAA GAAAGCCGAC
CAACTGATGT ATCAAGCCAA AACGGCGGGT GGCCGTTGCT ACCGCCTAGC TTGA
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| Protein sequence | MKLVLQLIVI LCCIFINNAV NASQGQTESL IVVMGEDSFP YQFVDNDGEA TGLLVDLWKE
WGKRTNTPLV FVARHWNESL QQLQQGKAQV HIGMGQTPER EQLFDFAEPI ADVSTYLYLH
KSLQGKKSIK ELIPYQIGIV SGSSHEAELR RIEPNLVFKY YESREKLLAG VAAGETVVFA
GLDGYLRDPA SSQAIAGSFP ISARIPIKAM QFVPAVMKGN QALVEKINQG FHSLDARFVQ
QTERRWLGYH GQKAGLVVAM QLGVEPFVDL GVDGLPHGFY VDLWQLWSAK TGINVDFISG
DMNASVNDVR QGLADAHIGY PESDELKTGL TRAWQLYTVK SRLFLYQQQL TDLQSLKGKR
IGVVPTAPYL VALRKALPDV TLRYYENMDS MVAGARSGEI AGFVAAGAWT SHYLLQNKAW
SEFHQYPELE FPTDVYVLTR SDDPGLTQRI TNGFRSISMQ EFAEVEQKWM LNPKDRIFNQ
KGLHGVQLSS SEQDYLSQLG ELKLGYLKQW PPMEFSDEQG QFAGINSDVS QLLAEQLRIN
IQPVAFDDWH SLIGALRSGE IALAGSIAQT AERQQFLTFS EPYWPSPWGL VSQLEQVSVF
NLAQLAGQRV AVVEGYHLVA QLMALQPSLK LVLVPDTQSG LSAVNDGHAD VFIDKVVTLA
SELKTGQYPL LKMSLLSDLA DQHSHFGLNP QYAPLVPLIN RVLGQIDQHT QQQIYSHWVS
FSLTTDNSQY LQWIRYLLLG ALVLSGVMVA VLVVNRRLNL EITRRIAAEK RLQHVASHDA
LTQLPNRALL DDRLSQALLA HRRDHSHFAL LFIDLDGFKQ INDQYGHPVG DALLLKVAGL
LTKAIRNSDT VARFGGDEFV ILLNRVQDLD AATQVADNIL HSLSSPFSIE GVTVEVAISI
GVVIYPRDGD TAIELMKKAD QLMYQAKTAG GRCYRLA
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