Gene Shewana3_1936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1936 
Symbol 
ID4479733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2301846 
End bp2304008 
Gene Length2163 bp 
Protein Length720 aa 
Translation table11 
GC content52% 
IMG OID639726518 
Productthiamine biosynthesis protein ThiC 
Protein accessionYP_869573 
Protein GI117920381 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0422] Thiamine biosynthesis protein ThiC 
TIGRFAM ID[TIGR00190] thiamine biosynthesis protein ThiC 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGTT TAGAATCGTC CTCAGAATCG ATTGCCGTGA ACACCCTAGG GCAAACGAGC 
CGCCGTGCGG CGCGCGCCCA GGCCCAAGCC TTTATCGATA CCCTTAAACC ATTACAACAC
CCTAATTCGC AAAAGTTGTA TTTGCAGGGG AGTCGTGAGG ATCTCCGTGT AGGGATGCGG
CAAATTCTGC AAACCGATAC GCGGATTGGC GGCACTGCAG CAGAGCCTAC AGTTGAGAAA
AATCCTCCCA TTCCTGTGTA CGACTGCGCG GGGCCTTATT CCGATCCAGC TGCGCAAATT
AACGTGCGCC AAGGCTTAGC CAAACTCAGA TTACCTTGGA TTATCGAGCG CCAAGATACC
GAAGTGCTTG ATTGTGCGAC CTCAGATTTC ACCCAGCAGC GCCTGAAGGA TGATGGGCTT
GATCATCTGC GTTTCGAAGC CGGTTCAAGT GCAATTGTTC GTCCCCGCCG TGCCTTACCG
GGTAAACGCG TGAGCCAATT ACACTATGCC CGCCAAGGGA TCATTACCCC CGAAATGGAG
TATGTGGCGA TTCGGGAAAA TATGGCGCTC GCCGAGGTGC AGGATGAAAT CTTAAACCGC
CGCGGCCAAG GTGAATCCTT TGGTACCGTG ATCGGTAAAT CGATTACCCC TGAATTTGTC
CGCGACGAAA TTGCCCGTGG GCGCGCCATT ATTCCGTTAA ATATCAATCA CCCTGAAGCT
GAGCCCATGA TTATTGGCCG TAACTTTCTG GTGAAAGTGA ATGCCAATAT CGGCAACTCG
GCGGTCACGT CTTCCATTGA GGAGGAAGTG GAAAAGTTAG TCTGGTCAAC CCGCTGGGGC
GCGGACACTG TGATGGACTT GTCCACGGGG CGATATATCC ATGAAACCCG TGAATGGATC
ATCCGAAACT CGCCAGTGCC GATTGGCACA GTGCCGATTT ATCAAGCTTT GGAAAAAGTA
AACGGTGTTG CCGAGCACCT GACCTGGGAA GTATTTCGCG ATACCTTGAT TGAGCAAGCG
GAGCAGGGCG TCGATTACTT TACCATCCAT GCGGGCGTGT TATTGCGCTA TGTGCCCATG
ACTGCCAAAC GGGTGACTGG GATTGTGTCC CGCGGCGGGT CGATTATGGC CAAATGGTGT
TTGAGTCACC ATCAAGAAAA CTTCCTCTAT ACCCATTTCC GCGAGATTTG CGAACTGTGT
GTTGCCTACG ATGTATCGCT GTCATTAGGT GACGGTATGC GTCCAGGCTC CATTGCCGAT
GCCAATGATG AGGCGCAGTT TGCCGAGCTT GAAACCTTAG GCGAGCTGGT CAAAATCGCC
TGGGAATACG ATGTGCAGAC CATTATCGAA GGGCCAGGGC ATATCCCGAT GCAGCTTATC
AAGGAGAATA TGGATAAGCA GCTTATCCAC TGCGCCGAGG CGCCATTTTA TACCTTAGGT
CCACAAATTA CCGATATTGC ACCGGGTTAC GATCATTTCA CCTCGGGGAT AGGTGCGGCG
ATGATTGCAT GGTATGGCTG CGCCATGCTC TGCTATGTGA CGCCGAAAGA ACACTTAGGT
TTACCCAATA AGCAGGACGT CAAACAAGGG CTGATTGCCT ACAAGATTGC CGCCCATGCG
GCCGATATTG CTAAAGGTCA CCCGGGCGCG CAGATCCGCG ACAATGCGTT ATCTAAGGCG
CGCTTTGAAT TCCGTTGGGA AGACCAATAT AACTTAGGGC TTGACCCTGA TACCGCGCGT
GCCTATCACG ATGAATCCCT GCCACAGGAA TCGGCCAAGG TTGCGCATTT TTGCTCTATG
TGTGGCCCTA AGTTTTGCTC GATGAAGATC ACCCAAGATG TACGTGACTA TGCGGCAAGT
TTAGCGGCGG GTGCGTTAGC AGGGGCTTCG TCAAGCCAGA ATAATGAAAC GACTGAAGCG
CTTGCATCGA TAAACTCTGC TCCACAAGGG CAAGCTAGCA AAGAAGCAAT CCAGCAGATC
AGAGTCAAAA CCCAAGATGA ATTAGCGGCG GCCATGGCGC AAAAATCGGC CGAGTTTGCG
GCCTCGGGCG CCAAACTGTA TCTGCCGCTA GGTGATGCTA ATGCAGCCAA TACTGCCAAC
GAATCGGCAA AGCATCAGGA TGGGACAGAG CTCCAACCCA CAGTACAGGT AGCGGAGGTT
TGA
 
Protein sequence
MSSLESSSES IAVNTLGQTS RRAARAQAQA FIDTLKPLQH PNSQKLYLQG SREDLRVGMR 
QILQTDTRIG GTAAEPTVEK NPPIPVYDCA GPYSDPAAQI NVRQGLAKLR LPWIIERQDT
EVLDCATSDF TQQRLKDDGL DHLRFEAGSS AIVRPRRALP GKRVSQLHYA RQGIITPEME
YVAIRENMAL AEVQDEILNR RGQGESFGTV IGKSITPEFV RDEIARGRAI IPLNINHPEA
EPMIIGRNFL VKVNANIGNS AVTSSIEEEV EKLVWSTRWG ADTVMDLSTG RYIHETREWI
IRNSPVPIGT VPIYQALEKV NGVAEHLTWE VFRDTLIEQA EQGVDYFTIH AGVLLRYVPM
TAKRVTGIVS RGGSIMAKWC LSHHQENFLY THFREICELC VAYDVSLSLG DGMRPGSIAD
ANDEAQFAEL ETLGELVKIA WEYDVQTIIE GPGHIPMQLI KENMDKQLIH CAEAPFYTLG
PQITDIAPGY DHFTSGIGAA MIAWYGCAML CYVTPKEHLG LPNKQDVKQG LIAYKIAAHA
ADIAKGHPGA QIRDNALSKA RFEFRWEDQY NLGLDPDTAR AYHDESLPQE SAKVAHFCSM
CGPKFCSMKI TQDVRDYAAS LAAGALAGAS SSQNNETTEA LASINSAPQG QASKEAIQQI
RVKTQDELAA AMAQKSAEFA ASGAKLYLPL GDANAANTAN ESAKHQDGTE LQPTVQVAEV