| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1925 |
|---|
| Symbol | |
|---|
| ID | 4478233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2289868 |
|---|
| End bp | 2291463 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639726507 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_869562 |
|---|
| Protein GI | 117920370 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGG ATCAACAAAC GGTTACCCCA TTAGAGAATT TCTCGCCCAA GGTGGCGCAG
CGCGCCGTAC ATAGGGTGCA ACCCGAGCTG AATTTCTGGC AAATCTTCAA TATGTGCTTT
GGCTTTTTGG GGATCCAATT CGGCTTCGCC CTGCAAAATG CCAACGTCAG CCGCATTTTC
CAAACCCTTG GCGCCTCTAT CGATGATATC CCCATCCTGT GGATTGCCGC ACCGTTAACG
GGTCTGCTGG TTCAACCTAT TATTGGTTAT CTTAGCGATA ACACATGGGG GCGTTTAGGT
CGCCGCCGGC CGTATTTTTT AATCGGCGCC ATTTGTACGA CTCTTGCGAT TTTTGTGATG
CCACATTCCC CGACGTTATG GATTGCCGCA GGCATGCTGT GGATTATGGA TGCCTCAATC
AATATCGCCA TGGAACCCTT CCGTGCCTTT GTGGGGGATA ATTTGCCTCC CAAACAGCGC
ACCCAAGGCT ATGCCATGCA AAGCTTTTTT ATCGGCATCG GCGCGGTTGT TGCCTCGGCC
CTGCCCTATG TTCTCAGCAA CTACTTTGAT GTCGCCAATA CGGCGCCCGC GGGTGAAATC
GCCGATTCGG TGCGTTATGC CTTCTATTTT GGTGGTGCCG TGCTGTTTCT CAGCGTGGCT
TGGACTGTTG TGTCCACCAA AGAATATTCC CCCGATGAAC TCGCCGCCTT CCATGGCAAT
GCTGACGCAG GCGCAGATGA GCAACAACAT CGCACTCGTA CCCATAAGAA TTATCAATTT
GCCGCTATCG TTTGGATGGC TGTAGGCGCA TTACTGACTT TTGCAGTGTG GGCACAGGAT
TTAGATAAGC AGCTGTATAT TTTAACCTTA GGGATTTTTG TCTTTGGCCC ATTGCAACTT
TACTGCGCCC TGCGTTTAGG CAAATCAACG CCCTCACAAC GCGCGCAACT GGGCATTGTC
TTTAATGTGG TCGACGATTT ATTCCATATG CCGAAGGCCA TGCATCAGTT AGCGATAGTG
CAGTTTTTCT CTTGGTTCGC GCTCTTTGCG ATGTGGATTT ACACCACCTC GGCGGTGACG
TCCTACCATT TTGGCAGCAG CGATGTGTTG TCTAAGGCCT ATAACGATGG CGCCGATTGG
GTGGGCGTAC TGTTCGCCTC CTACAATGGA TTTTCGGCCA TTGCGGCCCT GTTTATCCCG
CTACTGGCTA AACGTATCGG TATCAAACTG ACCCACACCT TTAATATGTT CTGCGGCGGT
TTTGGCTTGA TCAGTTTCTA TTTTATTAAA GATCCCAGTC TGTTATGGCT GCCTATGATT
GGCGTGGGTA TCGCCTGGGC TTCGATTCTC TCCGTGCCCT ACGCCATGTT ATCCGGCGCC
TTGCCGCCGA AAAAGATGGG CGTGTATATG GGGATCTTTA ACTTCTTTAT CGTGATCCCA
CAGCTGCTCG CGGCCAGTGT TTTAGGCTTA ATTCTTAATG GTTTGTTTGA TGGTCAACCC
ATCTACGCCC TGATCACCGG CGGCGTTCTG ATGCTCTGCG CCGGAATTGC CGTGCTCTTT
GTTGAGCAAC CGAATACTCA GCACACTCAA GCGTAA
|
|---|
| Protein sequence | MSADQQTVTP LENFSPKVAQ RAVHRVQPEL NFWQIFNMCF GFLGIQFGFA LQNANVSRIF
QTLGASIDDI PILWIAAPLT GLLVQPIIGY LSDNTWGRLG RRRPYFLIGA ICTTLAIFVM
PHSPTLWIAA GMLWIMDASI NIAMEPFRAF VGDNLPPKQR TQGYAMQSFF IGIGAVVASA
LPYVLSNYFD VANTAPAGEI ADSVRYAFYF GGAVLFLSVA WTVVSTKEYS PDELAAFHGN
ADAGADEQQH RTRTHKNYQF AAIVWMAVGA LLTFAVWAQD LDKQLYILTL GIFVFGPLQL
YCALRLGKST PSQRAQLGIV FNVVDDLFHM PKAMHQLAIV QFFSWFALFA MWIYTTSAVT
SYHFGSSDVL SKAYNDGADW VGVLFASYNG FSAIAALFIP LLAKRIGIKL THTFNMFCGG
FGLISFYFIK DPSLLWLPMI GVGIAWASIL SVPYAMLSGA LPPKKMGVYM GIFNFFIVIP
QLLAASVLGL ILNGLFDGQP IYALITGGVL MLCAGIAVLF VEQPNTQHTQ A
|
|---|
| |