| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1776 |
|---|
| Symbol | |
|---|
| ID | 4478663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2091072 |
|---|
| End bp | 2091530 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726359 |
|---|
| Product | putative GAF sensor protein |
|---|
| Protein accession | YP_869415 |
|---|
| Protein GI | 117920223 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1956] GAF domain-containing protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0635695 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0905724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGC AATTTTATGA GTCACTGAAT CGTCAAGCGC TGGCCTTACT CGAGGGCGAG
GATGATTTAG TGGCTGCTAT GGCTAACTTT TCTGCTTTGC TAAACGATAA CCTAACCGAA
CTGAACTGGG TGGGTTTTTA CGTGATGCGT GGCGAACAGC TGGTGTTGGG TCCTTTCCAA
GGTAAAGTGG CCTGTACCCG TATTCCAATG GGTAAGGGCG TGTGCGGTAC CGCCGCACAA
ACCAATCAGA CGCAGCGTGT CGCCGATGTG CATCAATTTG ATGGCCATAT CGCCTGCGAC
TCGGCCAGTA ATTCTGAAAT TGTTATCCCA GTCCGCGCCG ATGGTAAGGT TGTGGCCGTG
CTGGATATCG ATAGTCCTAT TTTTGACCGC TTCGATGAAG AGGACCAAAA GGGCTTGGAA
TTATTGGTAA AAAGCTTCGA AAACTGCCTA TTTGCTTAA
|
|---|
| Protein sequence | MKPQFYESLN RQALALLEGE DDLVAAMANF SALLNDNLTE LNWVGFYVMR GEQLVLGPFQ
GKVACTRIPM GKGVCGTAAQ TNQTQRVADV HQFDGHIACD SASNSEIVIP VRADGKVVAV
LDIDSPIFDR FDEEDQKGLE LLVKSFENCL FA
|
|---|
| |