| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1770 |
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| Symbol | yebU |
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| ID | 4478657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 2083636 |
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| End bp | 2085168 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639726353 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_869409 |
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| Protein GI | 117920217 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[S] Function unknown |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases
[COG3270] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.475142 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.596617 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG CCAAGGGAGA AAATCCCAGC CCAGTAAAGG ATTATGATAT ACTTGCCGCA
GTTGATACAC AGCCTAATCC CGTTATGGTT CAATTAAATC AAAATTTTAT CAATACTATT
GCCCAAGAAC TGCCCGCCCA TCTCTCAATG GATGACTTTA TTGCGGCCTG TTCGAGACCA
CTACGTCGCT CGATTCGCGT CAATACCTTA AAGACCAGCA GTGAAGACTT TAAGCGCTTA
ATGCAGCCCA AAGGATGGAC CTTTGAGCCC ATTCCATGGT GTGAGGATGG CTTCTGGATA
AGCTACGATG AAGAAGAGCA GCTCGGCAAC GCCCTAGAGC ATATTCAGGG ATTGTTCTAT
ATCCAAGAAG CCAGCTCCAT GTTGCCCCCC ACAGCGCTAT TTACCCCAAA TGCGGATTGG
CAATGTGTAT TAGATTTAGC CTCTGCGCCC GGCTCTAAGA CCACTCAAAT GGCGGCATTA
ATGAATAATC AAGGCTTATT AGTCGCCAAT GAATATTCCG CCAGCCGTGT CAAAGTGCTC
CATGCCAATG TGCTACGCAT GGGTGCCAGT CACTGTGCCC TGACCCACTT TGATGGACGG
GTATTTGGCG AGTATCTGTA TGAAAGTTTT GATGCGGTAT TGATTGATGC TCCCTGCGGC
GGTGAAGGCA CAGTTCGTAA AGATGCGGAC GCGTTAAAAT CTTGGTCCCT TGATGAAGTA
ATCGAAATTA GCGAAACCCA AAAGGCGTTA ATCGAATCCG CCTTTTTGGC GTTAAAACCG
GGTGGCAGTT TGGTGTATTC CACTTGCACC CTTAATCGGC ACGAAAACCA AGGCGTGTGC
GAATATTTAC AGCAAACCTA TGGCGATGCG GTGCAATTTG AGTCCTTAAG CCAATTGTTT
GATGGCGCTG AAAAAGCCAC TACGCCAGAA GGCTTTTTGC ACGTTTGGCC GCAAATTTAC
GACAGTGAAG GCTTTTTTGT CGCTAAGCTG ACTAAAACTC GCTCCGTGCC CCGTCTGCAA
CCTGAGCCTA AATTACAAAA GAATTTCCCC TTTACGGAGG CGAGTGCCAA ACAAGCCAAA
GCCATTCAAG CCTATTTTGC CGATGATCTG GGTATCGAAC TGCCCGATGA TCTCATTATG
GTGCGCGACG ATGAGTTTTG GCTCTTCCCC CATGAATTTA GAGACTTTAT TGGCAAAATG
CGCTTTCAGC GGATTGGGGT GAAGCTTGCC GACCACAGTA AGCATGGCTT TAAAGTCCGC
CATGAAGCCA TTATCGCACT TGCGGGTAAA GCGCTTAAAG CTGGGGCAAA AAATGGCGCG
AAAGTCGTCG AAGTAAGCGA TGAGCAGGCG AAAGAATATT TGATGGGACG AGATATTCCC
CTCGATACGG CGGGCAAAGC TCAAGGCGAA GTGATTGTCT GTTATGGCGG TGCGCCTTTA
GGCATGGCTA AACATTTAGG CAATAAATTA AAAAACAGCC TGCCCAGAGA CTTAGTAAAA
GATAAAGTCC TATTGCTACC ACCACAGGCA TAA
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| Protein sequence | MAKAKGENPS PVKDYDILAA VDTQPNPVMV QLNQNFINTI AQELPAHLSM DDFIAACSRP
LRRSIRVNTL KTSSEDFKRL MQPKGWTFEP IPWCEDGFWI SYDEEEQLGN ALEHIQGLFY
IQEASSMLPP TALFTPNADW QCVLDLASAP GSKTTQMAAL MNNQGLLVAN EYSASRVKVL
HANVLRMGAS HCALTHFDGR VFGEYLYESF DAVLIDAPCG GEGTVRKDAD ALKSWSLDEV
IEISETQKAL IESAFLALKP GGSLVYSTCT LNRHENQGVC EYLQQTYGDA VQFESLSQLF
DGAEKATTPE GFLHVWPQIY DSEGFFVAKL TKTRSVPRLQ PEPKLQKNFP FTEASAKQAK
AIQAYFADDL GIELPDDLIM VRDDEFWLFP HEFRDFIGKM RFQRIGVKLA DHSKHGFKVR
HEAIIALAGK ALKAGAKNGA KVVEVSDEQA KEYLMGRDIP LDTAGKAQGE VIVCYGGAPL
GMAKHLGNKL KNSLPRDLVK DKVLLLPPQA
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