| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1735 |
|---|
| Symbol | |
|---|
| ID | 4479568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2043372 |
|---|
| End bp | 2044184 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639726318 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_869374 |
|---|
| Protein GI | 117920182 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1806] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0066836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.176615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCAA AGGTATTTTA CATCTCCGAC GGGACAGCGA TCACAGCTGA GGTTTTTGGG
CATGCAGTAC TCTCGCAATT TCCATTAGAA TTTGAGTCAC TTACAATTCC ATTTGTTGAA
ACATTGGCAA AAGCCGAGAA CGTTAAACGA CAAATTAATG ATTGTTTTAT TACAACAGGT
GAAAGGCCGT TAGTGTTCCA TTCGATCGTA AAACCTGAAA TTCGGGACAT TATTTATTCG
AGTGAAGGAC TCGATTACGA TTTTTTAAAT ACCTTCGTTG CACCACTTGA ACAACATTTA
GGCGTTAGCG CCTCTCCGGT GTTACATCGC ACCCACGGGA AAGCCAATCA CGGCTACGAA
GCCCGTATCG ATGCCATCAA TTTTGCGATG GACAATGACG ATGGCCAAAC CATGAAACAT
ATGGATCAGG CGGATTTAAT CCTGCTTGGC GTGTCACGCT GCGGTAAAAC ACCGTCCAGC
CTCTATTTAT CGATGCAGTT TGGTATTAAA GCGGCTAACT ATCCCTTCAC CGAAGACGAT
ATGGATAACC TGAAACTACC TGAAGCGTTA AAACGCAATA AGAAGAAGTT GTTCGGCTTA
ACCATCGATC CGGTGCGCTT ACATGAAATC CGCCAAAGCC GCATGGAAAA CAGCCGCTAC
TCGTCCTTAA AGCAGTGTCG TTTAGAGGTA AAAGAAGTCG AGATGATGTT TAAACGTGAA
CGTATTCCTT ATATCGACAC CACCAACCAC TCGGTCGAAG AAATCGCCAC TAAGATTTTG
GATGTGACAG GCTTAGAACG CCATATGTTC TAA
|
|---|
| Protein sequence | MAPKVFYISD GTAITAEVFG HAVLSQFPLE FESLTIPFVE TLAKAENVKR QINDCFITTG
ERPLVFHSIV KPEIRDIIYS SEGLDYDFLN TFVAPLEQHL GVSASPVLHR THGKANHGYE
ARIDAINFAM DNDDGQTMKH MDQADLILLG VSRCGKTPSS LYLSMQFGIK AANYPFTEDD
MDNLKLPEAL KRNKKKLFGL TIDPVRLHEI RQSRMENSRY SSLKQCRLEV KEVEMMFKRE
RIPYIDTTNH SVEEIATKIL DVTGLERHMF
|
|---|
| |