| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1729 |
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| Symbol | |
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| ID | 4479562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 2035692 |
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| End bp | 2038376 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639726312 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_869368 |
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| Protein GI | 117920176 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0724746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCCAA TTTCCACCTT CTTGAGATTT TTTGGCGCAA ATCAAACTAT GGGTAAATCG
CTAGTTATTG TCGAATCACC GGCCAAAGCT AAGACTATTA ATAAATATCT TGGCAAAGAA
TTCATCGTTA AATCGAGCGT GGGGCATATC CGTGACCTAC CAACCTCTTC TTCATCTGAC
GGCAATGAAA AGGTGAAATC CGCCGCCGAA GTGAAGAAGA TGTCGCCAGA AGAAAAGGCG
CGATATAAAA AGGTGAAAGA GCACCAGGCG CTGGTGTCGC GTATGGGCGT TAACCCTGAA
AAGGGCTGGG CGGCTAAATA TCAAATCCTA CCGGGTAAAG AGAAAGTCGT TAAAGAGCTG
CAAGCCTTAG CCGATTCTGC TGACCAAATC TATCTTGCAA CGGACTTAGA CCGTGAAGGG
GAAGCCATCG CCTGGCATTT GCAAGAGGTG ATTGGTGGCG ATCCTTCACG GTATCAACGC
GTTGTATTTA ACGAAATCAC CAAATCTGCG ATTCAAGAAG CCTTTAGTAA ACCTTCTTCC
CTCGACACTA ATATGGTGAA TGCCCAGCAG GCGCGACGCT TTTTAGACCG TGTCGTCGGC
TTTATGGTGT CTCCACTGTT GTGGAAAAAG GTTGCCCGCG GCTTATCCGC AGGACGGGTG
CAATCCGTGG CCGTGCGTCT TGTGGTGGAG CGTGAAAGCG AAATCAAAGC CTTCGTACCT
GAAGAGTTTT GGGATGTGCA CGCACAGCTG AATACGCCTG CGAGCGAAGC GCTACGCATG
GAAGTGGTAA AGTACTTAGA CTCAGCCTTC GAGCCCACAA ACGAGCAGCA AGCGTTAGCC
GCCGTTCAAG CCTTATCCTC TGCCAGCTTT AAAGTGATCG CTCGTGAAGA TAAAGCGACT
CAAAGTAAAC CTTCGGCTCC TTTTATTACC TCAACCCTAC AACAAGCGGC CAGTACTCGC
CTAGGCTTTG GGGTGAAGAA AACCATGATG ATGGCCCAGC GCTTGTACGA AGCGGGTCAC
ATCACTTATA TGCGTACCGA TTCGACAAAC TTAAGCCAAG AAGCGTTAGA CAGTGTGCGT
GAGATGATCG GCAAGGAATA CGGCGCCAAG TATTTACCTG CCGAACCAAT TCGCTACGGC
TCTAAGGAAG GCGCACAAGA GGCGCACGAA GCGATTCGTC CATCAAACGT GAAGGTCGAA
GCGGCTGCAT TAACCGATAT GGAACGTGAT GCACAGCGTC TCTACGAGCT GATTTGGCGT
CAGTTTGTGT CATGCCAGAT GACACCTGCC CAATACGATG CGACCAAACT CACGGTTAAG
GCGGGTGACT ATGAACTGAA AGCGACGGGA CGTATCCTGC GCTTTGACGG TTGGACTCGT
GTTCAAACCG CATTGAAAAA GAAAAATGAA GAAGACAATA CCTTGCCATC GGTGAACGAA
GGTGATCTGT TGTCTCTGGT TGAACTAGAG CCTAAGCAAC ACTTTACTAA GCCGCCTGCC
AGATACAGCG AAGCGTCATT GGTAAAAGAA TTAGAGAAGC GTGGTATCGG TCGTCCTTCA
ACCTACGCCA CGATTATTTC GACGATTCAA GAGCGGGGTT ATGTCAAAGT TGAAAACCGC
CGTTTCTACG CAGAGAAAAT GGGCGAGATT GTCAGTGAGC GTTTAGTCGG TAGTTTTGCT
GAGCTGATGA GCTACGACTT TACCGCCAGC ATGGAACAGA CCCTTGACGA TGTCGCCAGT
GGTGAGCTGG ATTGGAAAAA GGTTCTCGAT GGTTTCTATG CCGACTTCAC TAAACAACTC
GAGAAGGCGG AATTGGCACC AGAAGAAGGC GGTATGCGCC TCAATCAAAT GGTGATGACC
AATATTAAGT GTCCGACTTG CGGTCGCCCC ATGGGGATCC GTACCGGCAC AACTGGGGTG
TTCCTGGGTT GTTCGGGTTA CGAGTTGCCA CCGAAAGAGC GCTGCAAAAC CACCATGAAC
TTAACGCCAG GCATTGAAGC GATTAGCGAC AGTGAAGATG CTGAAACCGA TGCGCTACGC
GCCAAGCATC GTTGCGGCAT TTGTGGCACT GCGATGGACA GCTATCTTAT CGACGAAAAG
CGTAAGCTGC ATGTTTGCGG TAATAACCCC ATCTGTGAGG GTTATGAAGT CGAAGAAGGA
CAATTTAAGA TCAAAGGTTA CGAAGGTCCA TTAATTGAAT GTGACCGCTG TGGCCATGAT
ATGGAGCTGA AAAACGGCCG TTTCGGTAAA TATTTTGGTT GTACTAACGA GGAATGTAAG
AATACTCGTA AGTTACTGAA AAACGGTGAA GCTGCGCCAC CAAAAGAAGA TCCTATTTAT
CTGCCAGAGC TGAAATGCAG CAAGTCTGAT GCGCATTTTG TGCTGCGTGA CGGTGCGGCA
GGGATTTTCT TGGCAGCCAG TACTTTCCCT AAATCTCGGG AAACCCGGGC GCCACTGGTT
GAAGAGTTAG TGAAATATCG CGAGCTATTG TGGCCAAAAT ATCAGTATCT TGCCGATGCT
CCTATCGCCG ATGATGAGGG GAATAAAGCG GCGGTTAAGT TTAGCCGTAA GACCAAAGAG
CAATATGTGG CGACCGAAGT TGATGGTAAA GCAACCGGAT GGTCGGCGCA TTATGTGAAT
GGTAAATGGG TGACTGAATC GACGGCGAAG AAAGCTAAGA AGTAA
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| Protein sequence | MEPISTFLRF FGANQTMGKS LVIVESPAKA KTINKYLGKE FIVKSSVGHI RDLPTSSSSD
GNEKVKSAAE VKKMSPEEKA RYKKVKEHQA LVSRMGVNPE KGWAAKYQIL PGKEKVVKEL
QALADSADQI YLATDLDREG EAIAWHLQEV IGGDPSRYQR VVFNEITKSA IQEAFSKPSS
LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVAVRLVVE RESEIKAFVP
EEFWDVHAQL NTPASEALRM EVVKYLDSAF EPTNEQQALA AVQALSSASF KVIAREDKAT
QSKPSAPFIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEALDSVR
EMIGKEYGAK YLPAEPIRYG SKEGAQEAHE AIRPSNVKVE AAALTDMERD AQRLYELIWR
QFVSCQMTPA QYDATKLTVK AGDYELKATG RILRFDGWTR VQTALKKKNE EDNTLPSVNE
GDLLSLVELE PKQHFTKPPA RYSEASLVKE LEKRGIGRPS TYATIISTIQ ERGYVKVENR
RFYAEKMGEI VSERLVGSFA ELMSYDFTAS MEQTLDDVAS GELDWKKVLD GFYADFTKQL
EKAELAPEEG GMRLNQMVMT NIKCPTCGRP MGIRTGTTGV FLGCSGYELP PKERCKTTMN
LTPGIEAISD SEDAETDALR AKHRCGICGT AMDSYLIDEK RKLHVCGNNP ICEGYEVEEG
QFKIKGYEGP LIECDRCGHD MELKNGRFGK YFGCTNEECK NTRKLLKNGE AAPPKEDPIY
LPELKCSKSD AHFVLRDGAA GIFLAASTFP KSRETRAPLV EELVKYRELL WPKYQYLADA
PIADDEGNKA AVKFSRKTKE QYVATEVDGK ATGWSAHYVN GKWVTESTAK KAKK
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