| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1717 |
|---|
| Symbol | |
|---|
| ID | 4479550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2020983 |
|---|
| End bp | 2021726 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726300 |
|---|
| Product | NAD-dependent deacetylase |
|---|
| Protein accession | YP_869356 |
|---|
| Protein GI | 117920164 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0846] NAD-dependent protein deacetylases, SIR2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000712347 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.253477 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCAGC ATATTGTGGT GTTAACTGGC GCGGGCATTT CTGCCGAATC GGGATTACGT
ACCTTTCGCG ATCAAGATGG TCTATGGGAA GAACATCATA TTGAAGACGT GGCCACTCCC
GAAGGTTATG CCCGCGATAC CGAACTGGTT GAGCGATTTT ATAACAGTCG TTGGGAGCAA
TTGCACAGTG GCGCCGTGAT GCCCAATGCG GCGCATCTGG CGTTAGCTAA GCTAGAGGCG
GAATTTGCCG GGCAATTATT GATTGTGACT CAAAACATCG ATGACTTACA TGAAAGGGCT
GGCTCACGGC GCTTATTGCA CATGCATGGG GAATTATCCA AAGGTCGCTG CCCACGCTCT
CGCCAAACTT TTTTATTGAG AGAACCCTTC GGCCCCAATA ACTGTTGTAC ATGCTGTATT
CCTGCGCAAC GATTACGCCC CCATGTGGTG TGGTTTGGTG AAATGCCGCT GGGGATGGAC
AGAATTCACG ATGCGCTCGA TAACTGCGAT TTGTTTATCG CCATTGGCAC CTCTGGCACT
GTGTATCCGG CGGCAGGGTT TGTCGATACG GCCAATCATC ATGGCGCGCA AACGGTGGAA
GTTAATTTAG TCACACCCGA CAGGCATAGC CAGTTCCAAT ATCATTTAAC CGGTAAGGCG
GGGGAGTTGG TGCCTAAATT AGTCGATACC ATACTCGCAG GCAAAGTGAT TGGCTCCGAT
TTAGCCGAGT CTGATCTAAT CTGA
|
|---|
| Protein sequence | MYQHIVVLTG AGISAESGLR TFRDQDGLWE EHHIEDVATP EGYARDTELV ERFYNSRWEQ
LHSGAVMPNA AHLALAKLEA EFAGQLLIVT QNIDDLHERA GSRRLLHMHG ELSKGRCPRS
RQTFLLREPF GPNNCCTCCI PAQRLRPHVV WFGEMPLGMD RIHDALDNCD LFIAIGTSGT
VYPAAGFVDT ANHHGAQTVE VNLVTPDRHS QFQYHLTGKA GELVPKLVDT ILAGKVIGSD
LAESDLI
|
|---|
| |