Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1709 |
Symbol | sdhB |
ID | 4479542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2011730 |
End bp | 2012437 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 639726292 |
Product | succinate dehydrogenase iron-sulfur subunit |
Protein accession | YP_869348 |
Protein GI | 117920156 |
COG category | [C] Energy production and conversion |
COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0856361 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.316977 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTGG AATTTGCAGT TTATCGTTAC AATCCTGATG TAGATACAAA ACCTTACATG CAGGATTACA GCCTCGAAGT GGCTGAAGGC TCTGACATGA TGGTGCTTGA TGCACTGATC AAGTTAAAAG AACAGGACCC AACGTTAGCG TTCCGTCGCT CATGCCGTGA AGGTGTTTGC GGTAGTGACG GTGTGAACAT GAACGGTAAA AACGGTCTGG CTTGTATTAC GCCAATCTCT ACCTTCAAAG GTAAGAAGTT GGAAATTCGT CCACTGCCAG GTATGCCAGT CGTACGTGAC TTAGTGGTTG ATTTAACTCA GTTCTACAAG CAGTACGAGA AGATCAAGCC GTTCCTCATC AACGATGAGA AGATGCCTGC TCGTGAACAT TTACAGTCAC CTGAACAGCG TGCGCATTTA GATGGTCTGT ACGAATGTAT CATGTGTGCA TGTTGTTCTA CGGCTTGTCC ATCGTTCTGG TGGAATCCTG ATAAGTTTAT CGGTCCTAGC GGTCTGCTAC ACGCTTACCG TTTCTTGATC GACAGCCGCG ATACAGCGAC AGAAGAACGT CTTTCTGAGC TGGACGACGC CTACAGCGTG TTCCGTTGCC ACGGCATCAT GAACTGCGTT GACGTCTGTC CAAAAGGACT TAATCCGACT AAAGCAATTG GTCACATTAA GTCAATGCTG CTTAAGCGAG CTGTGTAA
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Protein sequence | MKLEFAVYRY NPDVDTKPYM QDYSLEVAEG SDMMVLDALI KLKEQDPTLA FRRSCREGVC GSDGVNMNGK NGLACITPIS TFKGKKLEIR PLPGMPVVRD LVVDLTQFYK QYEKIKPFLI NDEKMPAREH LQSPEQRAHL DGLYECIMCA CCSTACPSFW WNPDKFIGPS GLLHAYRFLI DSRDTATEER LSELDDAYSV FRCHGIMNCV DVCPKGLNPT KAIGHIKSML LKRAV
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