Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1708 |
Symbol | sdhA |
ID | 4479541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2009952 |
End bp | 2011718 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639726291 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_869347 |
Protein GI | 117920155 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0194037 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.398143 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTATTC CAGTACGTGA GTTTGATGCT GTAGTGATTG GTGCCGGCGG TGCTGGTATG CGCGCAGCAT TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTTTTATC TAAAGTATTC CCAACCCGTT CTCATACTGT TTCTGCGCAG GGTGGTATCA CCGTTGCGTT AGGTAACGCC CATGAAGACC ATTGGGAACA ACACATGTAC GATACCGTAA AAGGTTCCGA CTTTATCGGT GACCAAGACG CTATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT TGAACTCGAG CACATGGGTT TACCCTTCTC TCGTTTCGAT AACGGTAAGA TTTACCAACG TCCTTTCGGT GGTCAATCTA AAAACTTCGG TGGTGAACAA GCGGCGCGTA CCGCTGCAGC AGCAGACCGT ACTGGTCACG CACTGCTTCA CTGCTTATAC CAACAGAACG TTAAACACAA AACCCAAGTG TTTTCTGAGT GGTATGCCCT CGATTTAGTG AAAAACCAAG ACGGTGCCAT CGTAGGTTGT ACTGCGATTG AAATCGAAAC GGGTGAAATC GTTTACTTCA AAGCCAAAGC CACTGTACTC GCGACTGGCG GTGCTGGTCG TATCTACGCA TCAACCACAA ACGCACACAT CAATACCGGT GACGGTGTTG GTATGGCAAT GCGTGCTGGT GTTCAGATGC AAGATATGGA AATGTGGCAA TTCCACCCAA CCGGTATCGC TGGTGCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA GGCGGTTACC TGCTGAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC TCCAAACGCC AAGGACTTAG CATCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAAAT CCGTGAAGGC CGTGGTTTAG ATGGTCCATT AGGCCCACAC TGCTTGCTGA AACTCGACCA CTTAGGTAAA GAGACCTTAG AAGCCCGTCT ACCAGGCGTG TGTGAACTTT CTCGTACCTT CGCGCATATC GATCCGGCCG ATGGTCCAAT CCCTGTTCTG CCAACCTGTC ACTATATGAT GGGTGGTCTG CCAACGAAGG TGAGCGGTCA AGTTATTCGT AAGAATGACG ACGGCAGCGA GCAAGATGTG GTTGGTTTAT TCGCAGTAGG TGAGATTGCC TGTGTGTCTG TACACGGTGC TAACCGCTTA GGCGGTAACT CTCTGCTCGA CTTAGTGGTC TTTGGCCGCG CTGCGGGTCA ACACTTGGGT AAAGCACTCG ATGAGACTGC GGATCCAAAA GATGCGACCG ATGCGGAAAT TCAAGCGACT TTAGCACGCT TAAACCGCTG GGAAAGCAAC AAGTCTGGCG AAGACCCAGC GCAAATCCGT AAAGATTTAC AACTTTGCAT GCAATTAAAC TTCTCTGTAT TCCGCCGTGG CGATGCAATG GCAGAAGGTT TAGAGCAGTT AAAAGCTATC CGTAAGCGTT TAGAAAATGC CAAGTTGTCT GATAATTCTC GCGAATTCAA CACTCAACGT ATTGAATGTT TAGAGTTAGA CAACCTGATG GCGACGGCAA TTGCCACCGC TTATGCTGCT AACTTCCGTA CAGAGAGCCG TGGTGCTCAC TCACGTGAAG ACTATTTAGA GCGTGATGAT GATAACTGGT TATGTCACAC CCTGTTTGAC CCTGTGACTG AAACCATGGA CCGTCGTGCT GTGAATATGG CGCCTAAGTT ACGTGAAGCA TTCCCGCCGA AGAAACGTAC CTACTAG
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Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL PTKVSGQVIR KNDDGSEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG KALDETADPK DATDAEIQAT LARLNRWESN KSGEDPAQIR KDLQLCMQLN FSVFRRGDAM AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH SREDYLERDD DNWLCHTLFD PVTETMDRRA VNMAPKLREA FPPKKRTY
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