Gene Shewana3_1708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1708 
SymbolsdhA 
ID4479541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp2009952 
End bp2011718 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content49% 
IMG OID639726291 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_869347 
Protein GI117920155 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0194037 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.398143 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTATTC CAGTACGTGA GTTTGATGCT GTAGTGATTG GTGCCGGCGG TGCTGGTATG 
CGCGCAGCAT TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTTTTATC TAAAGTATTC
CCAACCCGTT CTCATACTGT TTCTGCGCAG GGTGGTATCA CCGTTGCGTT AGGTAACGCC
CATGAAGACC ATTGGGAACA ACACATGTAC GATACCGTAA AAGGTTCCGA CTTTATCGGT
GACCAAGACG CTATCGAATT TATGTGTCAA ACCGGTCCAG AAGCCATTAT TGAACTCGAG
CACATGGGTT TACCCTTCTC TCGTTTCGAT AACGGTAAGA TTTACCAACG TCCTTTCGGT
GGTCAATCTA AAAACTTCGG TGGTGAACAA GCGGCGCGTA CCGCTGCAGC AGCAGACCGT
ACTGGTCACG CACTGCTTCA CTGCTTATAC CAACAGAACG TTAAACACAA AACCCAAGTG
TTTTCTGAGT GGTATGCCCT CGATTTAGTG AAAAACCAAG ACGGTGCCAT CGTAGGTTGT
ACTGCGATTG AAATCGAAAC GGGTGAAATC GTTTACTTCA AAGCCAAAGC CACTGTACTC
GCGACTGGCG GTGCTGGTCG TATCTACGCA TCAACCACAA ACGCACACAT CAATACCGGT
GACGGTGTTG GTATGGCAAT GCGTGCTGGT GTTCAGATGC AAGATATGGA AATGTGGCAA
TTCCACCCAA CCGGTATCGC TGGTGCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA
GGCGGTTACC TGCTGAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC TCCAAACGCC
AAGGACTTAG CATCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAAAT CCGTGAAGGC
CGTGGTTTAG ATGGTCCATT AGGCCCACAC TGCTTGCTGA AACTCGACCA CTTAGGTAAA
GAGACCTTAG AAGCCCGTCT ACCAGGCGTG TGTGAACTTT CTCGTACCTT CGCGCATATC
GATCCGGCCG ATGGTCCAAT CCCTGTTCTG CCAACCTGTC ACTATATGAT GGGTGGTCTG
CCAACGAAGG TGAGCGGTCA AGTTATTCGT AAGAATGACG ACGGCAGCGA GCAAGATGTG
GTTGGTTTAT TCGCAGTAGG TGAGATTGCC TGTGTGTCTG TACACGGTGC TAACCGCTTA
GGCGGTAACT CTCTGCTCGA CTTAGTGGTC TTTGGCCGCG CTGCGGGTCA ACACTTGGGT
AAAGCACTCG ATGAGACTGC GGATCCAAAA GATGCGACCG ATGCGGAAAT TCAAGCGACT
TTAGCACGCT TAAACCGCTG GGAAAGCAAC AAGTCTGGCG AAGACCCAGC GCAAATCCGT
AAAGATTTAC AACTTTGCAT GCAATTAAAC TTCTCTGTAT TCCGCCGTGG CGATGCAATG
GCAGAAGGTT TAGAGCAGTT AAAAGCTATC CGTAAGCGTT TAGAAAATGC CAAGTTGTCT
GATAATTCTC GCGAATTCAA CACTCAACGT ATTGAATGTT TAGAGTTAGA CAACCTGATG
GCGACGGCAA TTGCCACCGC TTATGCTGCT AACTTCCGTA CAGAGAGCCG TGGTGCTCAC
TCACGTGAAG ACTATTTAGA GCGTGATGAT GATAACTGGT TATGTCACAC CCTGTTTGAC
CCTGTGACTG AAACCATGGA CCGTCGTGCT GTGAATATGG CGCCTAAGTT ACGTGAAGCA
TTCCCGCCGA AGAAACGTAC CTACTAG
 
Protein sequence
MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA 
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC
TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PTKVSGQVIR KNDDGSEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK DATDAEIQAT LARLNRWESN KSGEDPAQIR KDLQLCMQLN FSVFRRGDAM
AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH
SREDYLERDD DNWLCHTLFD PVTETMDRRA VNMAPKLREA FPPKKRTY