| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1603 |
|---|
| Symbol | |
|---|
| ID | 4476561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1880974 |
|---|
| End bp | 1882896 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726181 |
|---|
| Product | ABC transporter ATPase component |
|---|
| Protein accession | YP_869243 |
|---|
| Protein GI | 117920051 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0251377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.331537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTGG TTCGTATCAA TAATGGCTCG TTAGCCTATG GTTATACTCC GCTGCTGCAA
AATGCCGATT TTACTATCGA GCGCGGCGAG CGAGTGTGTA TTGTTGGCCG CAACGGTGCG
GGCAAGTCGA GTCTATTGAA GATTTTATCC GGCGATGTGC TGCTCGATGA AGGGGAATTC
AACATTGATG GCAGCGTCAC AGTCAGCCGT TTGCAGCAAG ATCCACCAAA GGCGGAGCAG
GGCTCGGTTT ACTCTTATAT CGCTGCAGGC TTAAAGGAAG TCGGTGAAGC GTTAGAGCAA
TACCATCAAC TGTCCCACGA TGTGGCTTAT GCCGAACCTG AGCTGATGGA GCGCATGCTT
AATCAAATGC AAAAGCTGCA GGAAACGTTA GATCATCACA ATGGCTGGCA GCTTGACTCG
CGCATCAAAC AAAACTGTGA GTTATTAGGC CTCGATCCCG ATAAATCCTT AAGTGAGTTA
TCCGGTGGTT GGCAGCGTAA AGTAGCGCTT GCCCGTGCCC TCGTCAGTGA GCCGGATTTA
TTGCTGCTCG ATGAACCGAC TAACCATTTA GATATCGATA CCATCGAATG GCTGGAGAAA
TTCCTGCTGG ATTTCCAAGG CGCTATCGTG TTTATCAGCC ACGATAGGGG CTTTATTGCC
CGCATGGCGA CCCGCATCGT CGATTTAGAC CGCGGCGTGG TGACCTCATG GCCTGGTAAT
TACCAAGCTT ATCTTGATGG TAAGCAGGAA TGGTTAAGGG TTGAAGCCGA GAAAAACGCC
TTATTCGATA AGCGATTAGC CGAAGAAGAA GTCTGGATCC GCCAAGGGGT TAAGGCTCGT
CGTACCCGTA ACGAAGGCCG CGTGCGTGCA CTCAAGGCGC TGCGTCAAGA ACGCAGTGAG
CGATTGAATC GTCAGGGCAA TGCCAAGATG GCGGTGGCCG ATACCGAGCG TTCGGGTAAG
TTGGTCTTTG ATGTGAAGGA CTTAAACTAC AATCTGCCCG ATAAAAATCT GGTTAAAAAC
TTTAATACCA CGGTACTTCG AGGCGATCGT ATCGCACTTA TCGGTCCGAA CGGTTGTGGT
AAATCGACCC TTATCAAGCT GTTGATTGAG AAGTTACAAC CCCAATCGGG TGAGGTGAAA
GTCGGCACTA AGTTAGAGAT TGCCTATTTC GACCAATACC GTGAGGCGCT GGATCCAGAG
CAAACCGTTG AAGACAACGT GGGTGAGGGT AAAAAGACCA TCACCATTAA TGGTCAAGAC
CGTCATATCT TAAGTTATCT GCAGGATTTC CTATTTTCGC CGATGCGCGC CCGTACGCCG
GTGAAGGCAT TATCTGGCGG TGAGAAGAAT CGGTTATTAC TGGCTAAGTT ACTTATTCGT
CCGGCTAACC TGATTATCCT CGACGAACCG ACAAACGATC TTGATATTGA GACCCTAGAA
TTGCTAGAGT CGCTGCTGAC TGAGTATCAA GGCACACTGT TGCTTGTGAG CCATGATAGG
GCTTTTATCG ATAACACTGT CACCAGCAGC TGGTGGTATG CGGGTAATGG GCATTGGAGC
GAGTATGTCG GTGGTTATCA AGACGCAATT GATCAAGGGG CAAAGTTTTA TTCAGAGGAA
CCTAGTCAGC CAAACACGGT CGAAGCTCCT GCGACAGTAA AAACCGCTGA GGTAAAAGTG
GCCGAGCCCG CCAAAGCCGC GAAAAAACTG TCCTATAAGT TACAGCGTGA ATTAGAGGCC
ATGCCTGAGT TGATGGAAAC ATTAGAGGCA GAAATCCTCG AATTGCAAAC CACAGTGGCA
AGCCCAGATT TTTATAGCCA AACACAGGAT AAAATCAATT CGGTATTGAA CCTGTTGGCG
GATAAAGAAA AGCAATTGGA AGTTTGCTTC GAGCGATGGG AAGAGCTTGA GTCACTGAAG
TAA
|
|---|
| Protein sequence | MSLVRINNGS LAYGYTPLLQ NADFTIERGE RVCIVGRNGA GKSSLLKILS GDVLLDEGEF
NIDGSVTVSR LQQDPPKAEQ GSVYSYIAAG LKEVGEALEQ YHQLSHDVAY AEPELMERML
NQMQKLQETL DHHNGWQLDS RIKQNCELLG LDPDKSLSEL SGGWQRKVAL ARALVSEPDL
LLLDEPTNHL DIDTIEWLEK FLLDFQGAIV FISHDRGFIA RMATRIVDLD RGVVTSWPGN
YQAYLDGKQE WLRVEAEKNA LFDKRLAEEE VWIRQGVKAR RTRNEGRVRA LKALRQERSE
RLNRQGNAKM AVADTERSGK LVFDVKDLNY NLPDKNLVKN FNTTVLRGDR IALIGPNGCG
KSTLIKLLIE KLQPQSGEVK VGTKLEIAYF DQYREALDPE QTVEDNVGEG KKTITINGQD
RHILSYLQDF LFSPMRARTP VKALSGGEKN RLLLAKLLIR PANLIILDEP TNDLDIETLE
LLESLLTEYQ GTLLLVSHDR AFIDNTVTSS WWYAGNGHWS EYVGGYQDAI DQGAKFYSEE
PSQPNTVEAP ATVKTAEVKV AEPAKAAKKL SYKLQRELEA MPELMETLEA EILELQTTVA
SPDFYSQTQD KINSVLNLLA DKEKQLEVCF ERWEELESLK
|
|---|
| |