Gene Shewana3_1595 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1595 
Symbol 
ID4476550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1871397 
End bp1874243 
Gene Length2847 bp 
Protein Length948 aa 
Translation table11 
GC content51% 
IMG OID639726170 
ProductPKD domain-containing protein 
Protein accessionYP_869235 
Protein GI117920043 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.230765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAATA ACAAAACGCT GTTGGCGTTA GCCATCAGTG GCGTGTGTGG GTTTGCCCAT 
GCTGCCGATA ATCTGATTAT TACTGAATAT GTTGAAGGCA GCAGCAACAA CAAAGCCATT
GAGTTATACA ACCCAACCGC CAGCAGCATC GATTTAAGCC AGTATCAATT GCGCTTCTAT
TTTAATGGTA GCACAACGGT GGGCACGACT ATCGCCCTGA CCGGCACCTT AGCCGCAGGG
GCGACTCATG TGGTTGCTGA TAATGATGCA TCGGCCGATA TTCTGGCGGT GACGAATCAA
CAAAGCAGCG CGAGTTTTTT CAATGGTGAC GATGCCATTG TGCTGACCTA TCAAGACCAA
GTGATTGATA GCTTAGGCCA AGTGGGCGTA GATCCCGGCA GTGAGTGGGG CAGTGGTGAT
TTATCGACGC AGGACAATAC CCTGCGCCGC AATCCCGAAC AGCTAATCGC CGATACCATT
ATTGATGATG TTGTCACCTT TAATACATGG TTAGGTTTTG CCAAAGACGA TATCTCGGAT
CTGGGCAAAT TCAGCGCAGG CACCCCCACC GATCCTGTTG AGCCGCCACC GAGTTCACTA
GCCTGTGGTG AAGCCTCAAC GCCTATCCAT GCCCTGCAAG GTTCGACCAA TGTCAGTCCG
TTAAACGGAC AAACCTTAGT GGTAGAAGCC ATTGTGGTGA GTAACCAAGA AGCTGGCCTC
AAGGGCATCT TCGTGCAAAT GGCCGATAAC GAAGCCGATA ACGATCCACA AACCTCGGAA
GGGGTGTTTG TTTATACCGG TAATGCGCCA ACGGGTTATG TGGCGGGCGA CCGTGTACGC
TTAAAAGCTA AAGTCACTGA ATATCAAGGC TTAACGGAAC TGACTACCGT TGCCGATCAT
AAACTGTGCG CCGCAGGTCA GACCCTACCG ACAGCCGCCG TGGTGACCTT ACCTGTGAAT
TCGAGCGATG ACTTTGAACC CTTTGAAGGC ATGCGCGTCC GCTTTAGCCA AGACCTGGTG
GTGAACGAAG TCTACAACTT GGGCCGCTAT GGTGAAATTT CACTCGGTAG CAGCCGTCAC
TTTATTGGGA CGCAAGTGGC CGCGCCAGGC ACAGATGCCT TAGCCGTCAC TGCTGCCAAT
CTCAAAGACA GTATTTTACT CGACGATGGC TTAACGGCGC AGAACCCTGA TCCTGTGATT
TTCCCGGCGC CAGGTTTAAG CGCTTCAAAC ACTGTGCGTG TGGGCGATAA AGCAACGAGT
CTGACGGGCG TTATGCACTA TGGCTTTAAT CTTTATCGCA TTATGCCGAC TGAGCCAGTT
AATTTTGTGG CAGAAAACCC TCGTCCACAA TCGCCAGTGC TTGCCGAAGG CGGCAACCTG
AAAGTCGCTA GCTTTAACGT ACTGAACTAC TTTAATGGCG ATGGACAGGG CAGCGGTTTC
CCTACTGCGC GCGGTGCCAA TACCCTGAGT GAGTTTGAGC GTCAAAAAGC GAAGATTGTC
AGCGCCATGG TAGGGACCAG TGCCGATGTG TTTGGTCTGA TGGAAATCGA GAACGATGGC
TTTGGCGCCA ACTCGGCGAT TGCCGATCTC GTGGCGGGCC TCAATGCCGC CGTGGGTGAA
AATCGCTATG CCTATGTTAT TCCAAAGGTC AATGGTAGCA ACTTAAGTGC GATCGGTACG
GATGCGATTA CCGTCGGTCT CATCTATCGC AGTGACAAAG TGAGCCCTCA GGGTGACGCG
CGTATTTTAT CCAGCGCGAA CTCTCCCTTA GATGACGCCG GGCAGCCACT ATTCGACGAC
AGCAAAAACC GCCCTATGTT GACTCAAGCC TTCGTGCTAA ACGGCAGTGA GGAGAGTGTA
GTCGTTGCGG TTAATCACTT GAAATCTAAG GGTAGTGAGT GTGCTGGCGA TCCAGATATG
AACGATGGTC AAGGTAACTG CAATATTACC CGTACCCGCG CAGCAACGGC GGCGGGGCAG
TGGATTGCAG AGCAGTATCC AGAGCAAGGC GTACTGCTGA TCGGCGACTT AAACTCCTAT
GCCAAGGAAG ATCCGCTAAG CGCATTGGCT AACGCTGGCT TTAGCGAGTT GTTTGCAAAA
CTTGAAAAAG CCAATCCTTA TTCCTATGTA TTCTCGGGTG AATCTGGGCA GTTAGACCAT
GCGCTGGCCA ATACCGCGTT AGTGGATAAA GTCGTGGATG TGACCGAGTG GCATATCAAT
ACCGACGAGC CACGGGTGTT AGATTACAAC GAAGAGTTTA AGACGGCTGC GCAGGTGCAA
GACCTTTATG CCAGTGATGC TTATCGCTCA TCGGATCATG ATCCTGTGGT GATTTCACTC
CTGCTCGAAG CGGAAAACGT GGCTCCTGAA GCCAGCTTCA CTCAGCTTGT GAATGGTGCG
AGTGTGCAAT TGACTTCAAC CTCCATTGAT AGCGACGGCC AAATTGTTTC TACTGAGTGG
GACTTTGGCG ATAATAGCCA AGCCATGGGC GAGTCGGTAT CCCACACCTA TGCGCAAACT
GGTGATTATC TAGTGACGTT AACAGTGACC GATAATGACG GTTTAAGCCA TAGCAGCTCA
CAAATGGTGT CTGTGGTGGT TGAGAACGTG AAAAAGCCAC CCGTGGCGCA AATTCAGCAC
ATCAATTTAT GGTTAGTCGA TATGTTTATT TCGACCAGCT ATGACACTGA CGGCGTGATT
AAACAGCATA AATGGAAGTT TGATAACGGT AGCCGTGCAA GTGGTCCTGT TGTGTTTCGC
CAAGCACGCC GCGGGCTGCA TACGGTCGAG TTAACCGTGA AAGACAATGA TAAATTAACG
GATACCACGT CACTGACGTT CCGTTAA
 
Protein sequence
MFNNKTLLAL AISGVCGFAH AADNLIITEY VEGSSNNKAI ELYNPTASSI DLSQYQLRFY 
FNGSTTVGTT IALTGTLAAG ATHVVADNDA SADILAVTNQ QSSASFFNGD DAIVLTYQDQ
VIDSLGQVGV DPGSEWGSGD LSTQDNTLRR NPEQLIADTI IDDVVTFNTW LGFAKDDISD
LGKFSAGTPT DPVEPPPSSL ACGEASTPIH ALQGSTNVSP LNGQTLVVEA IVVSNQEAGL
KGIFVQMADN EADNDPQTSE GVFVYTGNAP TGYVAGDRVR LKAKVTEYQG LTELTTVADH
KLCAAGQTLP TAAVVTLPVN SSDDFEPFEG MRVRFSQDLV VNEVYNLGRY GEISLGSSRH
FIGTQVAAPG TDALAVTAAN LKDSILLDDG LTAQNPDPVI FPAPGLSASN TVRVGDKATS
LTGVMHYGFN LYRIMPTEPV NFVAENPRPQ SPVLAEGGNL KVASFNVLNY FNGDGQGSGF
PTARGANTLS EFERQKAKIV SAMVGTSADV FGLMEIENDG FGANSAIADL VAGLNAAVGE
NRYAYVIPKV NGSNLSAIGT DAITVGLIYR SDKVSPQGDA RILSSANSPL DDAGQPLFDD
SKNRPMLTQA FVLNGSEESV VVAVNHLKSK GSECAGDPDM NDGQGNCNIT RTRAATAAGQ
WIAEQYPEQG VLLIGDLNSY AKEDPLSALA NAGFSELFAK LEKANPYSYV FSGESGQLDH
ALANTALVDK VVDVTEWHIN TDEPRVLDYN EEFKTAAQVQ DLYASDAYRS SDHDPVVISL
LLEAENVAPE ASFTQLVNGA SVQLTSTSID SDGQIVSTEW DFGDNSQAMG ESVSHTYAQT
GDYLVTLTVT DNDGLSHSSS QMVSVVVENV KKPPVAQIQH INLWLVDMFI STSYDTDGVI
KQHKWKFDNG SRASGPVVFR QARRGLHTVE LTVKDNDKLT DTTSLTFR