Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1595 |
Symbol | |
ID | 4476550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1871397 |
End bp | 1874243 |
Gene Length | 2847 bp |
Protein Length | 948 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639726170 |
Product | PKD domain-containing protein |
Protein accession | YP_869235 |
Protein GI | 117920043 |
COG category | [R] General function prediction only |
COG ID | [COG2374] Predicted extracellular nuclease |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.230765 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTTAATA ACAAAACGCT GTTGGCGTTA GCCATCAGTG GCGTGTGTGG GTTTGCCCAT GCTGCCGATA ATCTGATTAT TACTGAATAT GTTGAAGGCA GCAGCAACAA CAAAGCCATT GAGTTATACA ACCCAACCGC CAGCAGCATC GATTTAAGCC AGTATCAATT GCGCTTCTAT TTTAATGGTA GCACAACGGT GGGCACGACT ATCGCCCTGA CCGGCACCTT AGCCGCAGGG GCGACTCATG TGGTTGCTGA TAATGATGCA TCGGCCGATA TTCTGGCGGT GACGAATCAA CAAAGCAGCG CGAGTTTTTT CAATGGTGAC GATGCCATTG TGCTGACCTA TCAAGACCAA GTGATTGATA GCTTAGGCCA AGTGGGCGTA GATCCCGGCA GTGAGTGGGG CAGTGGTGAT TTATCGACGC AGGACAATAC CCTGCGCCGC AATCCCGAAC AGCTAATCGC CGATACCATT ATTGATGATG TTGTCACCTT TAATACATGG TTAGGTTTTG CCAAAGACGA TATCTCGGAT CTGGGCAAAT TCAGCGCAGG CACCCCCACC GATCCTGTTG AGCCGCCACC GAGTTCACTA GCCTGTGGTG AAGCCTCAAC GCCTATCCAT GCCCTGCAAG GTTCGACCAA TGTCAGTCCG TTAAACGGAC AAACCTTAGT GGTAGAAGCC ATTGTGGTGA GTAACCAAGA AGCTGGCCTC AAGGGCATCT TCGTGCAAAT GGCCGATAAC GAAGCCGATA ACGATCCACA AACCTCGGAA GGGGTGTTTG TTTATACCGG TAATGCGCCA ACGGGTTATG TGGCGGGCGA CCGTGTACGC TTAAAAGCTA AAGTCACTGA ATATCAAGGC TTAACGGAAC TGACTACCGT TGCCGATCAT AAACTGTGCG CCGCAGGTCA GACCCTACCG ACAGCCGCCG TGGTGACCTT ACCTGTGAAT TCGAGCGATG ACTTTGAACC CTTTGAAGGC ATGCGCGTCC GCTTTAGCCA AGACCTGGTG GTGAACGAAG TCTACAACTT GGGCCGCTAT GGTGAAATTT CACTCGGTAG CAGCCGTCAC TTTATTGGGA CGCAAGTGGC CGCGCCAGGC ACAGATGCCT TAGCCGTCAC TGCTGCCAAT CTCAAAGACA GTATTTTACT CGACGATGGC TTAACGGCGC AGAACCCTGA TCCTGTGATT TTCCCGGCGC CAGGTTTAAG CGCTTCAAAC ACTGTGCGTG TGGGCGATAA AGCAACGAGT CTGACGGGCG TTATGCACTA TGGCTTTAAT CTTTATCGCA TTATGCCGAC TGAGCCAGTT AATTTTGTGG CAGAAAACCC TCGTCCACAA TCGCCAGTGC TTGCCGAAGG CGGCAACCTG AAAGTCGCTA GCTTTAACGT ACTGAACTAC TTTAATGGCG ATGGACAGGG CAGCGGTTTC CCTACTGCGC GCGGTGCCAA TACCCTGAGT GAGTTTGAGC GTCAAAAAGC GAAGATTGTC AGCGCCATGG TAGGGACCAG TGCCGATGTG TTTGGTCTGA TGGAAATCGA GAACGATGGC TTTGGCGCCA ACTCGGCGAT TGCCGATCTC GTGGCGGGCC TCAATGCCGC CGTGGGTGAA AATCGCTATG CCTATGTTAT TCCAAAGGTC AATGGTAGCA ACTTAAGTGC GATCGGTACG GATGCGATTA CCGTCGGTCT CATCTATCGC AGTGACAAAG TGAGCCCTCA GGGTGACGCG CGTATTTTAT CCAGCGCGAA CTCTCCCTTA GATGACGCCG GGCAGCCACT ATTCGACGAC AGCAAAAACC GCCCTATGTT GACTCAAGCC TTCGTGCTAA ACGGCAGTGA GGAGAGTGTA GTCGTTGCGG TTAATCACTT GAAATCTAAG GGTAGTGAGT GTGCTGGCGA TCCAGATATG AACGATGGTC AAGGTAACTG CAATATTACC CGTACCCGCG CAGCAACGGC GGCGGGGCAG TGGATTGCAG AGCAGTATCC AGAGCAAGGC GTACTGCTGA TCGGCGACTT AAACTCCTAT GCCAAGGAAG ATCCGCTAAG CGCATTGGCT AACGCTGGCT TTAGCGAGTT GTTTGCAAAA CTTGAAAAAG CCAATCCTTA TTCCTATGTA TTCTCGGGTG AATCTGGGCA GTTAGACCAT GCGCTGGCCA ATACCGCGTT AGTGGATAAA GTCGTGGATG TGACCGAGTG GCATATCAAT ACCGACGAGC CACGGGTGTT AGATTACAAC GAAGAGTTTA AGACGGCTGC GCAGGTGCAA GACCTTTATG CCAGTGATGC TTATCGCTCA TCGGATCATG ATCCTGTGGT GATTTCACTC CTGCTCGAAG CGGAAAACGT GGCTCCTGAA GCCAGCTTCA CTCAGCTTGT GAATGGTGCG AGTGTGCAAT TGACTTCAAC CTCCATTGAT AGCGACGGCC AAATTGTTTC TACTGAGTGG GACTTTGGCG ATAATAGCCA AGCCATGGGC GAGTCGGTAT CCCACACCTA TGCGCAAACT GGTGATTATC TAGTGACGTT AACAGTGACC GATAATGACG GTTTAAGCCA TAGCAGCTCA CAAATGGTGT CTGTGGTGGT TGAGAACGTG AAAAAGCCAC CCGTGGCGCA AATTCAGCAC ATCAATTTAT GGTTAGTCGA TATGTTTATT TCGACCAGCT ATGACACTGA CGGCGTGATT AAACAGCATA AATGGAAGTT TGATAACGGT AGCCGTGCAA GTGGTCCTGT TGTGTTTCGC CAAGCACGCC GCGGGCTGCA TACGGTCGAG TTAACCGTGA AAGACAATGA TAAATTAACG GATACCACGT CACTGACGTT CCGTTAA
|
Protein sequence | MFNNKTLLAL AISGVCGFAH AADNLIITEY VEGSSNNKAI ELYNPTASSI DLSQYQLRFY FNGSTTVGTT IALTGTLAAG ATHVVADNDA SADILAVTNQ QSSASFFNGD DAIVLTYQDQ VIDSLGQVGV DPGSEWGSGD LSTQDNTLRR NPEQLIADTI IDDVVTFNTW LGFAKDDISD LGKFSAGTPT DPVEPPPSSL ACGEASTPIH ALQGSTNVSP LNGQTLVVEA IVVSNQEAGL KGIFVQMADN EADNDPQTSE GVFVYTGNAP TGYVAGDRVR LKAKVTEYQG LTELTTVADH KLCAAGQTLP TAAVVTLPVN SSDDFEPFEG MRVRFSQDLV VNEVYNLGRY GEISLGSSRH FIGTQVAAPG TDALAVTAAN LKDSILLDDG LTAQNPDPVI FPAPGLSASN TVRVGDKATS LTGVMHYGFN LYRIMPTEPV NFVAENPRPQ SPVLAEGGNL KVASFNVLNY FNGDGQGSGF PTARGANTLS EFERQKAKIV SAMVGTSADV FGLMEIENDG FGANSAIADL VAGLNAAVGE NRYAYVIPKV NGSNLSAIGT DAITVGLIYR SDKVSPQGDA RILSSANSPL DDAGQPLFDD SKNRPMLTQA FVLNGSEESV VVAVNHLKSK GSECAGDPDM NDGQGNCNIT RTRAATAAGQ WIAEQYPEQG VLLIGDLNSY AKEDPLSALA NAGFSELFAK LEKANPYSYV FSGESGQLDH ALANTALVDK VVDVTEWHIN TDEPRVLDYN EEFKTAAQVQ DLYASDAYRS SDHDPVVISL LLEAENVAPE ASFTQLVNGA SVQLTSTSID SDGQIVSTEW DFGDNSQAMG ESVSHTYAQT GDYLVTLTVT DNDGLSHSSS QMVSVVVENV KKPPVAQIQH INLWLVDMFI STSYDTDGVI KQHKWKFDNG SRASGPVVFR QARRGLHTVE LTVKDNDKLT DTTSLTFR
|
| |