| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1585 |
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| Symbol | cpdB |
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| ID | 4478814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 1859839 |
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| End bp | 1861896 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639726160 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_869225 |
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| Protein GI | 117920033 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.43946 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAATA AAAAACTACT CGCAGTGATG ATCACTGCCG CCTTAGGCGT AAGCGCCTGT
GGCTCGGATG ATGAGCAAAT CGTTCAAGCA GATTTACGTG TATTAGAAAC CACGGATCTG
CACACAAATA TCATGGATTT CAACTACTAC AGTGGTAAAG AAGACCCAAC AATTGGTCTA
GCTCGTACCG CAAGCCTTAT CCATGCCGCC CGTAAAGAAG CCAAAAACAG TGTACTCGTA
GATAACGGCG ACCTGCTTCA AGGTAGCCCT ATGGGTGACT ACATGGCTAA AGTAGGCCTG
CAAATGGGCG ATGTTCACCC CGCCTATAAA GCGATGAATC TATTAGATTA CGAAGTAGGT
AATATCGGTA ACCACGAATT TAACTATGGT TTAGATTTTT TAAATAAATC ACTTCATGGT
GCAGAATTCC CTTATATTAA CGCCAACGTC TATTGTACCG ACGATAATGG CTGCTGGAAT
GATGTGAAAA AAGGTGAGCA TTTATTCACC CCTTATATCA TTAAAGAAAA ACAAATTGTC
GATAGCGAAG GAAATAACCA AACCATTAAG ATTGGTTATA TTGGTTTTGT GCCACCACAA
ATCTTATTGT GGGATAAACA AAATCTGACC GGCAAAGTAA CGGTTGAAGA TATTGTGGCG
ACTGCCAAAA AATATGTGCC TGAAATGAAA GCAAAAGGCG CTGATTTGAT TATCGCAATT
CCACACTCTG GTATTGGTTC GACCGAAAAT CCTGGCGATC CTATGGCAGA GAACGCAACC
TATGCCTTGA CCTATGTCGA CGGTATTAAT GCCATCCTCT TTGGTCACAG CCACTCTATT
TTCCCCGATG CCAAATATGC CGACTTACCT AACACAGACG TGACTAAAGG CCTGTTAAAT
GGTGTGCCAG CCGTCATGCC TGGACGCTGG GGTGACAACT TAGGTGTGGT CGACTTTAAA
CTCGAGCGTA AAGACGGTAA GTGGTCTGTG CTTAGTGCCA CCACTAAGGC ACGTCCTATC
TATGATGGTG CAACTAAAAC ACCATTAGTC GAAGCCGACG CCGCCATCCA TGATGCTGTC
GCTGCCGAGC ACCAAGGAAC ACTCGCCTTC GTGGACGAGC CAATTGGGGT TGCTGCCGCC
GATATGTATA GCTTCTTGAC CTTAGTGCAA GACGATCCAA CCGTACAAAT CGTTTCTGAC
GCGCAAATTG CTAACGTTAA AGCCAAACTC CCCGAGGCAT TAAAAGACCT GCCAGTTTTA
TCGGCTTCTG CACCATTCAA AGCCGGTGGT CGCCACGGTA CAACCAGCGA TGCAGACCAA
TATGTACAAG TGGATAAAGG CGCATTGACC TTTAAAAACG CCGCCGATCT TTACCTCTAC
CCCAACACTA TGGTGGCGGT CAAAGCGACA GGTGCTGAAT TGAAAGATTG GCTGGAGTGC
TCGGTTAACC AATTCAATCA AATCGATCCA ACCAAGACTA CGCCGCAGGA ATTAATCAAC
TGGGATGGTC ACCCAACCTA CAACTTCGAC GTGCTCGATG GCTTGACCTA CAAGATTGAT
GTGACTCAAC CAAGCAAGTT CGACCGCGAC TGCGCCGTCG TTAATGCCAA TGCTAACCGT
ATCGTCGATT TAAGCTACAC AGATACCAAC GGTAAAGTCT TCACTGGCGA AGAGTTTGCG
GCCAAAGAAT TTATCGTGGC CTCAAATAAC TACCGCGCCT TTGGTGGCAA GTTTGCCGGT
ACAGGCAGTG ATCATGTGGT ACTCGAACTG CCAGATACTA ACCGTGAAGC CTTAGCGGCC
TACATCACAG CGCAATCTAA GTTCAACGAA ACCACAGGCA AGTATGAAGG CATGGTCAAC
CCAAGTGCTG ACTACAACTG GGATTTCAAA ACCATCAGCA CCAATGTTGC GTTAGATATT
CGCTTCCAGA CCCAAGATAG CGATAAAGCC GCTGCCTTTA TCGAAGCCAA TAAACAACGC
GAAATGACCA AGATTAGTAA AGATGAACTC GGTTTTGCCG TGTACCGCAT CAACCTAAGC
CAAGATAAAG CGAAGTAA
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| Protein sequence | MLNKKLLAVM ITAALGVSAC GSDDEQIVQA DLRVLETTDL HTNIMDFNYY SGKEDPTIGL
ARTASLIHAA RKEAKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG
NIGNHEFNYG LDFLNKSLHG AEFPYINANV YCTDDNGCWN DVKKGEHLFT PYIIKEKQIV
DSEGNNQTIK IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVA TAKKYVPEMK AKGADLIIAI
PHSGIGSTEN PGDPMAENAT YALTYVDGIN AILFGHSHSI FPDAKYADLP NTDVTKGLLN
GVPAVMPGRW GDNLGVVDFK LERKDGKWSV LSATTKARPI YDGATKTPLV EADAAIHDAV
AAEHQGTLAF VDEPIGVAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PEALKDLPVL
SASAPFKAGG RHGTTSDADQ YVQVDKGALT FKNAADLYLY PNTMVAVKAT GAELKDWLEC
SVNQFNQIDP TKTTPQELIN WDGHPTYNFD VLDGLTYKID VTQPSKFDRD CAVVNANANR
IVDLSYTDTN GKVFTGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA
YITAQSKFNE TTGKYEGMVN PSADYNWDFK TISTNVALDI RFQTQDSDKA AAFIEANKQR
EMTKISKDEL GFAVYRINLS QDKAK
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