| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1513 |
|---|
| Symbol | |
|---|
| ID | 4477409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1761659 |
|---|
| End bp | 1763608 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726083 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_869153 |
|---|
| Protein GI | 117919961 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000309269 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG GGGGATTGAA ATTGAGTAAC CATAAAACGC TAAATCGTTT TCCTTTCGCA
CTGTTAGCAC TCGCCTGTTC ACTGCAACCA CTCCTGTCGG CACAGGCCGA TGACACAGAA
CTCGAACATA TAGTGGTCAC CGCCAGCGCT AAGGACCAAC AGTTAAGTTC GGCGCCCGCC
TCTATCTCTG TCATCGATGC CGAAGAGATT AAATTACTGC CCGTTAAAGA TCTCGGCGAC
GTGCTGCGTG GCAGTGTCGG GGTCAACGTG GTCAGCGGTA ACGCAGGACG TAACAGCCTC
TATGTCCGTG GTATGGATGA AACCTATGTA CTAATGCTCG TTAACGGCAA ACGCGTGTCC
TCCTCAAACG GCCTATGGCG CGGCGGTAAC TTCGACATTA CCGCAATTCC GATTGATGCA
ATCTCGCGGG TCGAAATTGT CCGTGGTCCA ATGTCGGCAC TCTACGGCTC AGACGCCGTT
GGCGGGGTGA TTAACGTGAT CACTAAGGCG CCGACCGAGG ATTGGCAGCT CACCCTCGAT
GCCGAATACA GTCAAATGCA AGAAGGGGAT GGTGGCGATA GACAACGCTA CAACGTGTTT
ACCTCGGGCA AATTGACCGA TAGCTTAGGG CTGATGCTCA CCGCCGAATC CGCAGAGCAG
GATCTTTGGC AATTACCCGA AATCACGCCG ACTTTTGATA CCATAGAAGA GCGTAAAACC
AAGAAACTCT ACAGCGCACT CACTTGGCAG TTGGCTGACA ATCAAACATT AGACTTTGAT
TATCAATATG ATAAAGACAA AGTCCCCCTC ACAACCTATG CTGAGAAATC AAAGCGCGAA
CAGCAAATCG AGCGCAATAC CTTTGGCCTT ACCCACAAGG CAGACTGGCA ATGGGGCCAA
ACCCAGTTAG AGGCCAATCT CGAAGATTCT AAGCTCTACG ACTACAACAG CCGTTACAGC
CTGCAACCGC CCTTGGGTCG CCATATTGAT GAAAAGAATA CTAGCTTCAA AGCCACCAGC
TTTTTCAGCC TATGGCAGCA GGACTTTACC TTAGGCGGCG AATACCATAA GACCGAGGTT
GAAGATCCTG TTCAGTACCC CACAACTAAG GGTGACAGCG TCGACCAATA CTCACTCTTC
GCCCAAGATG AAATCGACTT CTTAGATGAC TGGACGCTGA CCTTAGGTGC CCGCTACGAA
GATAATGAAA AGTATGGCAA TAACCTCAGC CCGCGCGCCT ATATTGTCTA TCGTGCCACC
GATAAACTGA CCTTTAAAGG CGGTGTCGGC ACGGCCTTTA GGGCTCCGGC ATTATTTGAG
TCATCGCCCA CCTTTGCATC AGTCAGTTGC GGTGGCGCCT GCTCCGTGGT TGGTAATCCC
GATCTCGACC CAGAAACCAG CGTAAACTAT GAGTTCTCAG TGCTAATGAG TGATAACACC
TGGGATATTT CGGCAACGGC CTACCATAAT AAAGTCAAAG ACTTAATCAC TGTATCGACC
TGGGATAGAG TGAGCCCGAG CCGGACTTAT TACAATGAGT CCGAAGTGAC TTTACAGGGG
ATAGAACTGA CGGGCCGAAT CGATTTGACC GAAGATCTCA GTCTTAAAGG CAACTACAGC
TATCTAGATA CGGAAAAAAG CGATGGCTCA GAGTTAAATG GACGTCCCGA TCAAACCGCC
AACCTTCAGC TCGATTGGCA TATGACTGAT GACTGGCAAC TTTATGTCAG CGGTAACTAT
TTTGGTGACT ACTTAGATAG CAGCGCGATA AAACGCAGTG GCTATAGCCG CTTCGATTTT
GGCACCAGCT ATCGGTTAAC GGAAAACATC AAGCTACGCG CGGGTATGAC CAACTTTACC
AATGAGCAAC CCGCTGAAGA TTCCGACGGC ACCACAGAAA CCATTCTGCC GGGACGCGCC
GTGTTCGCCG GGGTGACGTT AACGCTGTAA
|
|---|
| Protein sequence | MDIGGLKLSN HKTLNRFPFA LLALACSLQP LLSAQADDTE LEHIVVTASA KDQQLSSAPA
SISVIDAEEI KLLPVKDLGD VLRGSVGVNV VSGNAGRNSL YVRGMDETYV LMLVNGKRVS
SSNGLWRGGN FDITAIPIDA ISRVEIVRGP MSALYGSDAV GGVINVITKA PTEDWQLTLD
AEYSQMQEGD GGDRQRYNVF TSGKLTDSLG LMLTAESAEQ DLWQLPEITP TFDTIEERKT
KKLYSALTWQ LADNQTLDFD YQYDKDKVPL TTYAEKSKRE QQIERNTFGL THKADWQWGQ
TQLEANLEDS KLYDYNSRYS LQPPLGRHID EKNTSFKATS FFSLWQQDFT LGGEYHKTEV
EDPVQYPTTK GDSVDQYSLF AQDEIDFLDD WTLTLGARYE DNEKYGNNLS PRAYIVYRAT
DKLTFKGGVG TAFRAPALFE SSPTFASVSC GGACSVVGNP DLDPETSVNY EFSVLMSDNT
WDISATAYHN KVKDLITVST WDRVSPSRTY YNESEVTLQG IELTGRIDLT EDLSLKGNYS
YLDTEKSDGS ELNGRPDQTA NLQLDWHMTD DWQLYVSGNY FGDYLDSSAI KRSGYSRFDF
GTSYRLTENI KLRAGMTNFT NEQPAEDSDG TTETILPGRA VFAGVTLTL
|
|---|
| |