| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1478 |
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| Symbol | |
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| ID | 4478115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1718719 |
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| End bp | 1722066 |
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| Gene Length | 3348 bp |
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| Protein Length | 1115 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639726048 |
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| Product | hypothetical protein |
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| Protein accession | YP_869118 |
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| Protein GI | 117919926 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000313073 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.981736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTC GCACTTCGTA TCTTGTGGGC CTGATGGCCA CCGTTTTAGC TGTTTCTTCC
ACGACCTCTT TTATTGATCC TGCGATAGCT GCTGATACTC CCAAAATAAA ACCTTTAAAA
ATCATGGGGC CAGACGGACA GATCCGTCAG GTCAATCATC AATATGGACC AACGACCTCT
AAGGACACTT TCTGGAGCAT TGCGCAAAAA GTCCGTCCCG ATGCCAGCGT CAGTGTTTAT
CAGGTGATGG CCGCGGTATT TGATGCTAAC CCCCATGCGT TTAACTCCGA CAGTTATAAC
AGCCTCGAAC GTGGCATGAT TTTGCTGATC CCTTCGAAAG AAGTGATGCT CGCCATTCCC
AATAGTCTGG CCATTGCCCG CGCCGAACGC AGCGATAAGC AGGCCCGTTC TGGCGCTAAA
GCCACGCCTA GGGTAGAAAC CAAACCTGCG ACTAAGCCAG CTGCACCGAC TCAGACCGTG
GCACAGCCTA AACCTAAGGT GGATACGCCC CCTAAGGCCG AGGTGAAGCC TGAAGCGGCA
ACAGTGACTA AAGCGGAAGT AGCTGCGACG CCAACCGCGC CTAAGATGGT GAGCTCGGAT
ATCAATGCAC GCCTCGAAGC GGCGGAGAGC AAGAATTTAT CCCTGACTGA CGAGTTAGCC
AGAGCGCAAG ATCAACTCGC GGTGAGAAAT ACCGATGTTG AGACACTCAA AGCTAAGGTT
GAAGAATTAA ATCAACAGAT TGCGGTATTA GAAGAAACTC TGCAGGCCAG CAAGAAGCAA
AACCTTGCCC TTAAAGCCGA GGTTGAGGCT GCACAAACGC CAGAGACCGC GACAACAGAC
GAACCTGCCA TGCCAGCAGA GCCCGATGAT CTGTGGCGCA ACCTGATGAG TAATCCGCTA
CTCCTCGTTG CGGCGGCGGT GATCCCCGCA TTATTGCTAC TGGTCCTCGT CTTCTGGCTA
TTACGCCGTA AACGCAATAA AGAGCGCCGC GAGCTAGAAG TGCAGCAGGC GGCTATGATG
GCCGCGGGTG CGGCTGGCGT GGCGAGTGCG TCTGTGCTGG CGATGGACGA TGATGATCTT
AGCGACATGG CGGTGCATTT AGATACTGAC CATGCCGATT CCATCGACAG TTTACTCGAT
GTCGGCAGTG TCGACCTGCA ACCCGAGCAG GAAATGACCG ATAGCCATGA ACAGATGGAC
ATGGCATCAG AAATGTTTAT TGACCCAGGT GTTAGCACTG AACCTCAGTT TGAAGAGGAA
GAAGGCCAGT CTCTAGACGA TCTCTGGGCT GAGGCCATGG GTGATCAAGA GGAAGCCGAA
GCTTTTGCCG AAGAAAAAGC CGCATCCGGC AATATTCTGG AGGAAGAAGA TCTCGATGCA
CTGCTGGCTG GATTAGGCTC TGATGAAGAA GATACCCCGC AGGAAGCTCA AGCCACTGCT
GCCGGGCTTG ACGAACTCGA CGAATTAGCC GGTTTCGATT TACCTGCTGA ACCAGAGCCC
GCCGCTGAGG ATGAAGATTT AGCCGCCGCG ATTGCCGCCG AACTCGATTC TGAGCTTGAA
AACGACGCAG CGCCAGCCGA CGATGATATC GATGCGTTAC TCGCAGGCTT TAACCAGCCC
GAGGTTAACG AGCCTGCCAC AGCGGCCGAT GAGGATCTTG ATGCCTTACT GACCGATGAT
GCTCAGGCAC CAGCAGAAGC AGCTGACGAT CTCGGCGATG AAATTGCCGC CGAGTTGGAT
GATGACTTAG CCGAGTTAGG CGTCGCGCAA ACCGATGATA TTGATGCTTT ACTGGCAGAT
TTTGATAAAC CCGCCGCGCC CGAACCCGAT TTAAGCGATG AAATTGCCGC CGAGCTCGAT
GATGACTTAA CTGATATAGG CGTAAGCGAA TCCGATGATA TCGATGCGCT TCTTGCCAGC
TTTGATGCTC CCGCGCAGCC CGATCCTGAA GTCGCCGCGG CGATTGCTGC CGAGTTGGAT
GATGAACTCG CTCCCGACTT ACCAACGAGC GATGAAGACC TCGACCAGTT ATTGGCAGGC
TTTAACACGC AAGAAGCGCT CGTCGAAGAG GCTGCTGCCG ACGTTACTGG AGCCGACGAT
GCTGAGGCCG AGGATATGGC TCAAGTTGAA GCCGCCCTTG AGCGCGATGA CATCGCCACC
GAACTCGAAG CCGCATTACC TGAAGACCTG TCGATGGCTG ATGACGACCT CGATTCACTC
TTAGCCGAGT TCGATGTGCC AGAACAAGCC GAGGCTGATG CCGACGACTT TAACTTCGAC
TTAGAAACCA CGCATGTCGA GCCAGAAGAA AAAGACGAGG AAGAAGATTT ACTCAAGGGC
ATTGGTGCCG CCCATGCCAT TGATGGCACA GACGATACTT TCGAGCTGAG CGAAGAGATT
GCGGATAACC AAGACAGTGC GGATAACGCT GCCGCAGAAC CTAAGTTTAC AGGCTTTGAT
GAAGATACTG ACGATATCGC GCCGGCACTG GCGGGTGCCG CTGTCGCCGC ATCAGTAGCG
GCTGCAGCAA GTGCGAAGGA AAAAGAGTCA TCTTTCTTCA ATGACTTAAA GGCCAATAAG
ACTAAAGATC CCCATGTGCT CGATTGGGAT ACCGAACTGA ATTTTGCGCC TACGCCTAAG
GCGGAAACGC TGGTCAAACC GGAAACCGAT TTGCCTTTAG ATCCTGTACC AGTGCAGGGC
ACTAAACGTC AACCGCTGGA GTTTGCGCCA GATGCGAAAC CAGAGGTTGA TGCCAAAAAT
ACAGCTGCGA GCACTGAGTT TAACCTCGAC GATGAGCTGG ATTTGGGCCG CGAGTTTGAT
TTAAAAGACG ATACCGATGA TGTCGATTTA AGCGATGACA GCGTGCTTGC CGCCTTTAGC
ACCAATACCG AACCCGAAGA GGAAGAGGTA TTAACGCCTG AGGATAGCTT TGCCCTCGAT
GATGAACACA CGCTCACCGT CGATGAGGCC TTAGCCGCCC TCGATGCGCA GGAATCCCGC
AAGTCGAAGA AGTTTGTTCC AGAGCATGAT TTAACTAACT TCCAAAACGA GCATGGTTAT
ATCGATATCG AGAAACTGCT TAACGATGCT GAGCAAGACA ATACTGAGAC AGATCTTTAT
CCCGAAATGG ATGTTGAGAT GAGTGATGTG GGCGCGCTGA TTGGCGATGC TGCCATGATC
GACGTGGACG ATGAGGAAAA TTCAGTCAAT GCCAAGCTCG ATTTAGCCCG TGCCTATATC
GAAATCGATG ACAGTGACAG TGCTAAAGCA TTGCTACGGG AAGTCCAAAT CGACGGTAAC
GAGCGTCAGC AAGAAGAAGC GGCCCGTTTA CTTAAAGAGA TGGGTTAA
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| Protein sequence | MKFRTSYLVG LMATVLAVSS TTSFIDPAIA ADTPKIKPLK IMGPDGQIRQ VNHQYGPTTS
KDTFWSIAQK VRPDASVSVY QVMAAVFDAN PHAFNSDSYN SLERGMILLI PSKEVMLAIP
NSLAIARAER SDKQARSGAK ATPRVETKPA TKPAAPTQTV AQPKPKVDTP PKAEVKPEAA
TVTKAEVAAT PTAPKMVSSD INARLEAAES KNLSLTDELA RAQDQLAVRN TDVETLKAKV
EELNQQIAVL EETLQASKKQ NLALKAEVEA AQTPETATTD EPAMPAEPDD LWRNLMSNPL
LLVAAAVIPA LLLLVLVFWL LRRKRNKERR ELEVQQAAMM AAGAAGVASA SVLAMDDDDL
SDMAVHLDTD HADSIDSLLD VGSVDLQPEQ EMTDSHEQMD MASEMFIDPG VSTEPQFEEE
EGQSLDDLWA EAMGDQEEAE AFAEEKAASG NILEEEDLDA LLAGLGSDEE DTPQEAQATA
AGLDELDELA GFDLPAEPEP AAEDEDLAAA IAAELDSELE NDAAPADDDI DALLAGFNQP
EVNEPATAAD EDLDALLTDD AQAPAEAADD LGDEIAAELD DDLAELGVAQ TDDIDALLAD
FDKPAAPEPD LSDEIAAELD DDLTDIGVSE SDDIDALLAS FDAPAQPDPE VAAAIAAELD
DELAPDLPTS DEDLDQLLAG FNTQEALVEE AAADVTGADD AEAEDMAQVE AALERDDIAT
ELEAALPEDL SMADDDLDSL LAEFDVPEQA EADADDFNFD LETTHVEPEE KDEEEDLLKG
IGAAHAIDGT DDTFELSEEI ADNQDSADNA AAEPKFTGFD EDTDDIAPAL AGAAVAASVA
AAASAKEKES SFFNDLKANK TKDPHVLDWD TELNFAPTPK AETLVKPETD LPLDPVPVQG
TKRQPLEFAP DAKPEVDAKN TAASTEFNLD DELDLGREFD LKDDTDDVDL SDDSVLAAFS
TNTEPEEEEV LTPEDSFALD DEHTLTVDEA LAALDAQESR KSKKFVPEHD LTNFQNEHGY
IDIEKLLNDA EQDNTETDLY PEMDVEMSDV GALIGDAAMI DVDDEENSVN AKLDLARAYI
EIDDSDSAKA LLREVQIDGN ERQQEEAARL LKEMG
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