| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1464 |
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| Symbol | |
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| ID | 4479681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 1698103 |
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| End bp | 1702404 |
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| Gene Length | 4302 bp |
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| Protein Length | 1433 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639726034 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_869104 |
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| Protein GI | 117919912 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000600207 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATCCT CGGACAATAC TAAGAACTAC ACTATGCCAA AAGCACTCTT ACAAATAATC
CTACTTAGTT GCTTATTTTT AAGCACTTTG ATTTCATCTT TCTCTGCTTC AGCATTTTCG
AGTGAAACCT CTCCCATAGT GATTTTACAG TCACAGTCAT TTGGTGTCGC ACAAGGTCTT
TCACAAGGTA CTGTAACTTC AATAGTTCAA GATAACGATG GCTATCTCTG GATAGGTACG
CTTAACGGGC TTAACCGGTT TGATGGAAGA AATTTCAAAC ATTTTTATGC AGATGGAACA
GATTCGGGCT TGCCTAGCTC ATTTATTAGA AGTTTACAAT TAGATAAGAA TGGTGATCTT
TACGTAGGTA CTGATAATGG TTTAGCGATA TATGATAAAA GTAAAGACTC ATTCATAAAA
TACGGCCATC CACTTGAGAA CAAACCTATT TGGAGCATAA ATATATCAAT AAATAGCCTA
ATCATTGGCA CCGATAACTC AATAATAGAA ATAACTGGGA AAAATAACTT TAATACATTA
GCACAAGAAG GAATAGGAGA AATAAAGAAG TCCATAAAAA TAGGTTATAC TTACTTATTT
AAAGACTATT CAGGAAAACT GTATGAGTTA AAGAACGGAA ACTTAACTCT CATTAAAGAA
AATGTTATAG ATATTGAACA AAAAGATGCC AACACTCTCA TACTATCTTC AAAGAATGGT
CTTTTTGAAT ATGATGGAAA CCTTGTAAAA AAAATAGATG ACCGTGCATT TTCACAATTA
GCCAAAAACA ATGAGCTTAT ATATGGGATT TCCGAAAACA GTATCATTAA CATTCTTACA
AGAAAAATCA TAGGATCATT ATCCGAATAC GCTCAAGATA AAGCAACTTA CTTTTATGTG
AACAAAAGTT ACTTTTCGGT TGGTAGTGTT GACCAAGGAT TTTCAATCAT AAAAAGTCAA
AGTAACTTAG TAAAACATAC CACGCTCGCT AACGACAGCA CTTGGCATAT AACTAAAAAC
AAAAGTGGTT TCCTTGTATC ATCAGATTCA GAATATATCT CTCTTTTCAA TAATAATTTT
CAAAAAGCAG TTGATTTCAA TACCCATACA AAGGGATATA AATATGCGGT AATGAACGAA
GGGAAACTTT TTTACGGAAC TAGCTCTGGA TTATTCGTTT TAGAAAACGA ATCAGCTACT
ATGCTGAGTC AAGAAACTAT CTCATCATTA TCTAGTAATG ATGATGGTTC AATCTTATCT
GCTGGAACTC CAGATGGAAA AATATTGATA ATTAAAGATT CTAATGTAAT AAATACCTTT
GACACACAAA GAGGGGAGCC GATTTTCGAT ATTGAAATAA TATCTGAAAA CCTGTTTTAT
GTGGCAAGTC AAGGTGGTTT AAGAAAATAT GAGAATGGCA ACGAAACTGT TGTCAGCGAA
CAATTAACTT ACAGTATAGA AAAAGATAAC AACAACATAT TATTTGGAAC TTCGTCAGCC
CTAATGCGTT ACAACACATT AACTGGCACA ATAGAAAAAG TATTATCAAA CAATAAAGAA
ATATATTCAA TTGTTAGTGA CATAGACTTC ATTACGGTAT CATCACTAGG TGAAGTCATT
GTTTACAACA AAAAAAACCA CTCTTCATAT ACATTAAATA CATCAAATGG AAGTCAATAT
GAGTATAACT CTCCTAGTGC TATAAGAGTT AACGAATTTG TTCTATTGGC AGGAATAAAT
GGGATAAGTA TTGTTTCTCC TGAAGAAGTT AATGAATACA TAAAAAACCA AAAAGTCAGC
AAAACTGAGA TAACAAACTT TTCAGTTTTC AATATTTCAC AAGAAAAAAA TGGCAAATAC
TTAAGCCAAC CAATTGATGT TACAAACGAA ATAAAACTAA AATACTCTGA ATATCCATTT
TCTTTCGATT TCATATCTCC AATGTCAGAT GAATTTGCTA CAAGCTATTA CTATAGAATG
CAAGGACTTT CTGACACTTG GATTTATTCA AATGGGACTA ATTCTGCAAC TTACACGAAC
TTATCACCAG GAAAATACGT TTTTCAAGTT TATGCTATGA ATAAACTTTC AGGAGATAAA
TCCCCTGAAA AAGAAGTAAA TATTATAATA ACTCCACCCT GGTGGTCTTC AACTCAAGCC
AAAGTAATTT ATTTCATTAT TTTAATGCTT TTCACCCTCT TTGTTTTCAA AGCAATCCTA
CGTAAACGAG AAATTCAACG CCAAATTGCA TTAAGCGAAG AACGCCTAAA ACTTTCTTTA
TGGGGGAGTG GCGATGAAAT GTGGGACTGG GATATTGAGA CTGGCAATAT TTTCCGTTCG
AATATTTGGG GAGCATTGGA ATTTCCGAGG GATGGTCACC GTTCTGGCAA CAGTGATGAA
GAGAGTAATA TTCATCCCAT GGAGCAAGAA CGTGTAAGGG AAGCACTCAA CAAACACTTC
TACGGTGAAA CTGATCATTT TGAAGCGGCC TATAGAGTTA AGGGCAAAGA TGATAGCTGG
ATCTGGATCT TAGACCGAGC AAAAATTGTA GAAAGAGATG ATAAAGATAA TGCGCTGCGG
ATGACGGGCA CAATAAAAAA TATTAGCCAG TTCAAGCAAA AGGAAGAACA ATTAAAACTG
TTCGAAAAAG CCATTGAAAA TATTTCCGAA GGTATGTTTA TTCTCGACAG CGAATATCGA
TTTGTAGAGG TGAACGAAGC GTGCTGTAGA ATATCTCAGC GTAATCGAAC CGATTTTATT
GGTAATCTGC TTACCTTCGA TTTGTATCCG GAATCCTTTT CTAATCAAAT TCGTACCATG
TTAAAACAAC AAGGCCGTTG GGCCAGCGAA GTCGAAGCCA GCCGTGGTGA CAATAGTCAT
TTCCATATGG AGCTGACTAT TGACGCCATT TACGATGAAT TAGGTGAATT ATCGCATTAC
GTAGGGGTAT TTTCTGATAT ATCGAGACGT AAACAGCAAG AAGAAGAACT TCGTAAACTC
ACCAACAATG ACCTATTAAC GGGGCTGCCC AATCGCTCAA ACTTGCAAGT CACATTAGGA
AACTTGGTTA ATAAAGAAAT TACCCATGCC TTAATGGTAC TCGACCTCGA CAATTTTAAA
CGTATCAATG ACTCCTTAGG CCATCAAATT GGCGATCAGT TACTCAAACT CGTCTCCATC
AGAATTAAGT CAATTCTCCC TAAAAACACC AGTATCTATC GTCTAGGTGG CGATGAGTTT
GCGATTGTAC TCGATAAAAC ATCTGACATC AGTGCTTCTG CCGCGATTGC AGGACGAGTA
ATTGAAGCCT TTAAAACCAT GTTTGAAATC GGTAATGAGC AGCTCGTTTT GGGCGTAAGT
ATTGGTATTG TTTTCTATCC TGAAGATGAA CAGAGTGAGC AGGCACTTCT GAGAAAAGCC
GATATTGCCA TGTATCATGC TAAATCTGCT GGCGGTAATT GTTACCAATT CTACTCAGAA
TCCCTTAACC AACATGCGAT TAAACAATTA GAAATTGAAA ACCTCATTCG TGAAGGATTA
AAAGAAGATT TATTTGAGGT GTATTATCAA CCCAAAGTCG ATCTTAAAAG TGGTCACGTC
GCGGGGATGG AAGCCTTAGT CCGTTTAAAT CATCCCACCC GTGGACTGAT CCCACCGAAT
GATTTTATTC CCCTTGCGGA AGAAAATGGC CTTATTATTG AAATCGGTGA AATTGTACTT
AGAAAAGCCT GTTTTGCGGC GCAGAAATGG CGTGAACAAG GGCTCTTCAA AGGAAGAGTC
GCCGTCAATT TATCGTCACG TCAGTTTGCC CTACCCGATT TACAGCAACG CATAGAATCT
ATTTTACGCT TAACGCAATT ACCGGCCTCT CACCTAGAAC TCGAAATCAC CGAAGGGACG
GTTATTAAGC AGCCAGAAAT GGCTATAACC GTTATGCAGC AATTAGCTAA GATGGGAGTG
AGCCTCGCGT TGGATGACTT CGGTACGGGT TATTCTTCAC TTTCTTACTT AAAACGGTTC
CCAATTCATA CGCTCAAAAT CGATAAAGCC TTTGTCGATG ATATTGATAA ATCTGACCGA
GATTTGAAGA TGGTCGATTC AATCATTACC ATCGCTCACA ATATGGGTCT GTCGGTTGTC
GGCGAAGGTG TAGAACAAGC CGCGCAGCTA AATATCCTTC GGGCCCTTAA CTGCGAAGAA
ATACAAGGTT ATATCTTTAG CAAAGCGATT AATGAAATTG AATTTACTCA ATTGCTTCAA
GATGATCGGA GTAAATTCAT GCCCCACCAC AAGATTATTT GA
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| Protein sequence | MASSDNTKNY TMPKALLQII LLSCLFLSTL ISSFSASAFS SETSPIVILQ SQSFGVAQGL
SQGTVTSIVQ DNDGYLWIGT LNGLNRFDGR NFKHFYADGT DSGLPSSFIR SLQLDKNGDL
YVGTDNGLAI YDKSKDSFIK YGHPLENKPI WSINISINSL IIGTDNSIIE ITGKNNFNTL
AQEGIGEIKK SIKIGYTYLF KDYSGKLYEL KNGNLTLIKE NVIDIEQKDA NTLILSSKNG
LFEYDGNLVK KIDDRAFSQL AKNNELIYGI SENSIINILT RKIIGSLSEY AQDKATYFYV
NKSYFSVGSV DQGFSIIKSQ SNLVKHTTLA NDSTWHITKN KSGFLVSSDS EYISLFNNNF
QKAVDFNTHT KGYKYAVMNE GKLFYGTSSG LFVLENESAT MLSQETISSL SSNDDGSILS
AGTPDGKILI IKDSNVINTF DTQRGEPIFD IEIISENLFY VASQGGLRKY ENGNETVVSE
QLTYSIEKDN NNILFGTSSA LMRYNTLTGT IEKVLSNNKE IYSIVSDIDF ITVSSLGEVI
VYNKKNHSSY TLNTSNGSQY EYNSPSAIRV NEFVLLAGIN GISIVSPEEV NEYIKNQKVS
KTEITNFSVF NISQEKNGKY LSQPIDVTNE IKLKYSEYPF SFDFISPMSD EFATSYYYRM
QGLSDTWIYS NGTNSATYTN LSPGKYVFQV YAMNKLSGDK SPEKEVNIII TPPWWSSTQA
KVIYFIILML FTLFVFKAIL RKREIQRQIA LSEERLKLSL WGSGDEMWDW DIETGNIFRS
NIWGALEFPR DGHRSGNSDE ESNIHPMEQE RVREALNKHF YGETDHFEAA YRVKGKDDSW
IWILDRAKIV ERDDKDNALR MTGTIKNISQ FKQKEEQLKL FEKAIENISE GMFILDSEYR
FVEVNEACCR ISQRNRTDFI GNLLTFDLYP ESFSNQIRTM LKQQGRWASE VEASRGDNSH
FHMELTIDAI YDELGELSHY VGVFSDISRR KQQEEELRKL TNNDLLTGLP NRSNLQVTLG
NLVNKEITHA LMVLDLDNFK RINDSLGHQI GDQLLKLVSI RIKSILPKNT SIYRLGGDEF
AIVLDKTSDI SASAAIAGRV IEAFKTMFEI GNEQLVLGVS IGIVFYPEDE QSEQALLRKA
DIAMYHAKSA GGNCYQFYSE SLNQHAIKQL EIENLIREGL KEDLFEVYYQ PKVDLKSGHV
AGMEALVRLN HPTRGLIPPN DFIPLAEENG LIIEIGEIVL RKACFAAQKW REQGLFKGRV
AVNLSSRQFA LPDLQQRIES ILRLTQLPAS HLELEITEGT VIKQPEMAIT VMQQLAKMGV
SLALDDFGTG YSSLSYLKRF PIHTLKIDKA FVDDIDKSDR DLKMVDSIIT IAHNMGLSVV
GEGVEQAAQL NILRALNCEE IQGYIFSKAI NEIEFTQLLQ DDRSKFMPHH KII
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