Gene Shewana3_1437 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1437 
SymbolsecD 
ID4479654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1665798 
End bp1667648 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content51% 
IMG OID639726007 
Productpreprotein translocase subunit SecD 
Protein accessionYP_869077 
Protein GI117919885 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000013441 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000143717 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGG TGCTCGTCAT CGCCATAGGT 
TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT
CGAGGTGCTG AAGTCACGGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCAGTAAG
GGCATTGCGG TAAAACGCTC TGAGCTTGAA AAAGGTCAAT TGTTGGTTCG CGTACAAAAC
GCGGATCAAC AGTTGCTGGC CAAGGAAACC ATCGCCGAAG ACTTAGGTGA CAAGTTTACT
GTGGCACTCA ACCTTGCCCC TGCCACCCCG CAGTGGCTCG AGTCTATGGG CGGTAGCCCA
ATGAAACTCG GTCTGGACCT TCGTGGTGGT GTGCACTTCT TAATGGAAGT GGACATGGGC
GAAGCCATCC GCAAGATGGA AGAGGCCAAA GTGGCCGATT TCCGTTCTCA ATTACGTGAA
GAAAAAATCC GTTACGCGGG CATTCGCAAC AATGCGCAAG GTATCGAGAT TAAATTCCGT
GATGCCGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CTCGCAGCAA CGATATGGTG
TTCAGCGATG TGAGCAAGGG TGAAGACTTT GCCCTGCAAG CCGTCATGAG CGAAACCTAT
CTTAAGCAGA TTAAAGAAGA AGCGCTGCAG CAAAACATTA CCACTATCCG TAACCGTGTG
AACGAGTTAG GGGTAGCTGA GCCGGTGGTT CAACGCCAAG GTGCTGAGCG TATTATCGTT
GAGCTGCCAG GTGTACAAGA CACTGCCCGC GCCAAGGAAA TCTTAGGTGC GACGGCATCG
ATTGAATTCC ACATGGTGGA CGATAAGGCT GACCCCAATG CGGCGCAATC TGGCCGTGTA
CCTGCGGGTT CTGAGGTGTA TCAACGCCGT GAAGGCGGTC AAGTGGTACT GAAGAAGGAA
GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GCTTCGACCA ATATAGCCGT
CCACAGGTGA GCATCAACCT CGATGCTAAA GGCGGTACCA TTTTCTCTAA CGTGACTAAG
GACAATATCG GTAAACCGAT GGCGACCTTG TTCATCGAAT ATAAAGACAG CGGTGAGCGT
AACGCCGATG GCAGCGTCAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCGACCATT
CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACCGGCTTAA GTCATGGTGA AGCACAAAAC
CTCGCACTGC TGCTGCGTGC TGGTGCCCTG ATTGCGCCCG TATCGATTGT GGAAGAACGT
ACTATCGGCC CAAGCCTGGG TGCGGAAAAC ATCGAAAGCG GTGTGCAAGC CATGATTTGG
GGTATGGCAG TCGTACTTAT CTTCATGCTG GTTTATTACC GTAGTTTCGG CTTGATCGCT
AACTTAGCCT TGACGGCCAA CTTAGTGATG GTGGTTGGGG TGATGTCTAT GATCCCTGGC
GCCGTATTAA CCCTGCCTGG TATTGCGGGT ATGGTGTTAA CAGTGGGTAT GGCGGTTGAC
GGTAACGTAC TGATTTACGA ACGTATCCGT GAAGAATTAC GTGCAGGTCG TAGCGTACAG
CAGGCGATTC ACGAAGGTTA CGGTAACGCA TTCTCTACCA TCGCTGACGC TAACATCACT
ACCTTCTTGA CAGCGCTGAT CCTGTTCGCC GTCGGTACTG GCGCGATCAA AGGCTTCGCG
GTGACCCTGA TGATCGGTAT TGCTACATCG ATGTTTACCG CTATCGTGGG TACCCGCGCA
ATCGTGAACG CGATTTGGGG CGGTAAGCGC GTGAAGACGC TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVVLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFT VALNLAPATP QWLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRN NAQGIEIKFR
DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSETY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRV
PAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IESGVQAMIW GMAVVLIFML VYYRSFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAIKGFA VTLMIGIATS MFTAIVGTRA
IVNAIWGGKR VKTLSI