| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1416 |
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| Symbol | |
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| ID | 4479013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 1640832 |
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| End bp | 1641854 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639725971 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_869056 |
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| Protein GI | 117919864 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.1433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGA ATCAACAAAT GGGTATCACA CGTCCATTAA AAACCGTCGC AAAAATGCTG
GCACTGGCCT CAGTGTTTGC GACCAGCTTT AACGTGTTTG CGGCGCCCGT TGAAATCAAG
TTCTCCCACG TGGTTGCAGA AAATACGCCA AAGGGTCAAA TGGCGTTGAA GTTTAAAGAA
CTCGTTGAGC AACGTTTACC TGGTGAATAT ACGGTCAGTG TATTCCCTAA CTCACAGTTA
TTTGGGGATA ACAACGAGTT AGCGGCACTG CTCTTAAACG ATGTGCAATT TGTCGCGCCT
TCTCTCTCAA AATTTGAACG TTATACCAAA CGCCTACAGG TTTTCGACCT GCCATTCCTG
TTTAATGACA TGGATGCAGT AAACCGTTTC CAACAAGGTG AAGCCGGTCA AGCACTGCTG
AACTCAATGA GCCGTAAAGG TATTGTCGGT TTAGGTTATC TGCACAATGG TATGAAGCAG
TTTTCTGCTA ACACACCACT GAAACAACCT TCTGATGCTA AAGGCTTAAA ATTCCGTGTA
ATGGCATCTG ACGTATTAGC CGCCCAGTTT GATGCTGTGG GCGCCATTCC TGTGAAGAAA
CCATTCTCTG AAGTGTTTAC CCTGCTGCAA ACCCGTGCGA TCGACGGTCA AGAAAACACT
TGGTCTAACA CCTACTCACA AAAATTCTAT GAAGTTCAAA GCCAAATAAC CGAAAGTAAC
CACGGCGTGC TGGACTACAT GGTCGTAACC TCTGACGCCT TCTGGAAGAG CTTACCAGCG
GATAAACGTA AAGTGATCAA AGAAGCCTTA GATGAATCTA TCGCTTTAGG TAACAAGATC
GCCGCTGAAA AAGATAACGA AGACAAGCAA TTAATCCTTG ATTCTAAACG TTCGCAACTG
GTGACCTTAA CGCCAGATGA GCGTCAAAAA TGGATTGATG TAATGAAACC TGTTTGGGCG
AAATTTGAAG ACCAAGTAGG TAAAGATGTG ATTGAAGCCG CTGTTGCTGC AAATAAACAA
TAA
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| Protein sequence | MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE
LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL
FNDMDAVNRF QQGEAGQALL NSMSRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV
MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSQITESN
HGVLDYMVVT SDAFWKSLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL
VTLTPDERQK WIDVMKPVWA KFEDQVGKDV IEAAVAANKQ
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