| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1407 |
|---|
| Symbol | |
|---|
| ID | 4479004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1624743 |
|---|
| End bp | 1626311 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639725962 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_869047 |
|---|
| Protein GI | 117919855 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1757] Na+/H+ antiporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0192762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG TAAGTTACGC CGATTCGGCA CTTTCTTTGC TGCCGCCTGT GGTCGCAATT
GTGTTGGCGA TTTTCACTCG CCGCGTTCTC CTTTCCCTCG GTTTAGGTAT TGTGATTGGG
GTGTTATTAC TCAATCAATT TTCACCTGTG GCCAGCGGTG AGTTTTTATT TAACAGTGTA
AAAGGACTTT TTTGGTCAGA AGATGGCGTA AATTCTTGGA ATTTATACAT TCTCGGCTTT
TTAATTGTAT TAGGGATGAT CACGGCATTA ATTACCGTCA GTGGGAGTGC CAGGGCATTT
GCCGATTGGG CGCGCCTGCA TATTCGCAAT AAACGCGATG CCAAATTACT GACCATGTTT
TTAGGTTGTG TTGTCTTTAT TGACGATTAT TTCAATAGCT TAGTCGTGGG CTCTGTCGCC
AGACCCGTCA CTGACCGTTA TTATATTTCC CGCGCTAAGT TAGCCTATTT ATTAGATTCA
ACGGCGGCGC CAGTTTGCGT TATTTCGCCG GTATCCAGTT GGGGCGCTTA TATTATCGCG
CTGATCGGCG GCATATTAAC CGCCCACGGT TTTGCTGATT CTGGTCATTT GAGTGTGTTT
ATTCAAATGA TCCCTATGAA TTTCTACGCT ATTTTCTCTT TATTATTATT ACTTTGTGTT
GCATTTATGG GCTTGGATAT TGGCCCTATG CGTGAGCATG AATTAAATGC ACAGCGCGGT
AATTTATATG ACGAGAATAA AGGATTACCG CCTGGGGCGA ATGCCGATTT ACCCGAAGCC
GAAACGGGTA AAATCCTCGG TTTATTCTTA CCTATTACTG TGCTGGTATT TGCGACCCTG
TATTTTATGG TCGACAGTGG TGCCCAGGTA TTAACGAAAG AAGGCATTGA ATTTAATATT
ATTTCTGCTT TTGAAAAAAC CGATGTGAGT TCATCACTGT TCTTTGGTGC ACTGATTGGT
TTAGCGGTTG CGCTGGTGCT TAACCTAGTG CAAGGCGTCG AAAAGTCGAT GGTCGTCAAA
GGCGTGGTGC AGGGCGCTCG CTCTATGCTG CCTGCGATTT ATATCCTGTT ATTTGCTTGG
ACCATCGCGG GCGTGATTGG CCAGCTTGAG ACCGGTAAGT TTATGGCAAG CCTCGCCACA
GGAAACATTC CCTTTGCCTT CTTACCTGCG TTGATGTTTG TGTTAGCGGG TCTGACGGCG
TTTTCTACCG GCACCAGTTG GGGCACGTTC GGTATTATGT TGCCGATTGC CGCCGATATG
GCGATGGGTA GCCACACTGC CATGATGTTA CCTATGCTGG CTTCTGTCTT GGCGGGCGCA
GTATTTGGTG ACCACTGCTC ACCGATTTCG GATACCACGA TTCTGTCGTC AACCGGCGCG
AGCTGTCACC ATATCGACCA CGTTGTCACT CAGCTGCCTT ACGCTGTGAT TGTGGCACTG
ATCAGCATGG TGGGCTACGT AGTGCTTGGC TTTACTGAGT CGGTGAATGC GGGACTGCTG
ACCTGTGGCG TGCTGTTTGT CTTAAGCATT GTGTGGTTAC GATTCAAATC ACAAAGCAAC
GCGAAATAA
|
|---|
| Protein sequence | MTVVSYADSA LSLLPPVVAI VLAIFTRRVL LSLGLGIVIG VLLLNQFSPV ASGEFLFNSV
KGLFWSEDGV NSWNLYILGF LIVLGMITAL ITVSGSARAF ADWARLHIRN KRDAKLLTMF
LGCVVFIDDY FNSLVVGSVA RPVTDRYYIS RAKLAYLLDS TAAPVCVISP VSSWGAYIIA
LIGGILTAHG FADSGHLSVF IQMIPMNFYA IFSLLLLLCV AFMGLDIGPM REHELNAQRG
NLYDENKGLP PGANADLPEA ETGKILGLFL PITVLVFATL YFMVDSGAQV LTKEGIEFNI
ISAFEKTDVS SSLFFGALIG LAVALVLNLV QGVEKSMVVK GVVQGARSML PAIYILLFAW
TIAGVIGQLE TGKFMASLAT GNIPFAFLPA LMFVLAGLTA FSTGTSWGTF GIMLPIAADM
AMGSHTAMML PMLASVLAGA VFGDHCSPIS DTTILSSTGA SCHHIDHVVT QLPYAVIVAL
ISMVGYVVLG FTESVNAGLL TCGVLFVLSI VWLRFKSQSN AK
|
|---|
| |